Browse Element(s) Details


OsAffx.12084.1.S1_at

Description tigr:9630.m01610
TID=OsAffx.12084.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1722011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17190Os.48621.1.S1_at11/112+9848226..9852381Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g17200OsAffx.12082.1.S1_at11/112+9853307..9854419hypothetical protein
LOC_Os02g17210OsAffx.12083.1.S1_at11/112+9867022..9868131F-box domain containing protein
LOC_Os02g17220OsAffx.12084.1.S1_at11/112+9871117..9871782transposon protein, putative, unclassified
LOC_Os02g17230OsAffx.24289.1.S1_at10/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17230OsAffx.30914.1.S1_x_at1/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17240Os.8089.1.S1_at11/112+9885607..9888391pollen-specific kinase partner protein, putative, expressed
LOC_Os02g17250Os.18074.1.A1_at11/112+9888628..9893606expressed protein
LOC_Os02g17260OsAffx.24290.1.S1_at11/112+9894795..9895713hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12084.1.S1_at--1045--8171Chr02:9871618..9871642 (25 bp)
GGAAGCGGAGACTGCGGTGAGCGAC
LOC_Os02g17220
OsAffx.12084.1.S1_at--1106--1371Chr02:9871610..9871634 (25 bp)
AGACTGCGGTGAGCGACGCGGGCAA
LOC_Os02g17220
OsAffx.12084.1.S1_at--1139--3351Chr02:9871472..9871496 (25 bp)
CACCATTGTCCTCGTTACGAGTCAA
LOC_Os02g17220
OsAffx.12084.1.S1_at--602--1731Chr02:9871471..9871495 (25 bp)
ACCATTGTCCTCGTTACGAGTCAAG
LOC_Os02g17220
OsAffx.12084.1.S1_at--1149--11Chr02:9871468..9871492 (25 bp)
ATTGTCCTCGTTACGAGTCAAGCCA
LOC_Os02g17220
OsAffx.12084.1.S1_at--139--10811Chr02:9871467..9871491 (25 bp)
TTGTCCTCGTTACGAGTCAAGCCAC
LOC_Os02g17220
OsAffx.12084.1.S1_at--807--7171Chr02:9871465..9871489 (25 bp)
GTCCTCGTTACGAGTCAAGCCACTT
LOC_Os02g17220
OsAffx.12084.1.S1_at--38--9391Chr02:9871461..9871485 (25 bp)
TCGTTACGAGTCAAGCCACTTCCTT
LOC_Os02g17220
OsAffx.12084.1.S1_at--241--4011Chr02:9871460..9871484 (25 bp)
CGTTACGAGTCAAGCCACTTCCTTG
LOC_Os02g17220
OsAffx.12084.1.S1_at--1053--6771Chr02:9871459..9871483 (25 bp)
GTTACGAGTCAAGCCACTTCCTTGC
LOC_Os02g17220
OsAffx.12084.1.S1_at--110--9951Chr02:9871457..9871481 (25 bp)
TACGAGTCAAGCCACTTCCTTGCCG
LOC_Os02g17220
Target Sequence
GGAAGCGGAGACTGCGGTGAGCGACGCGGGCAACACCTCCCCCTCCACCGCCACCGCCACCCCTCCTCCTCCTCCAGGCC
CATCTCCATCTCCGCCGCCCCGTCCGACCTCCTCGCCAGCGTCGAGTCCGTCGCCTCCGCCCTCACCACCATTGTCCTCG
TTACGAGTCAAGCCACTTCCTTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis