Browse Element(s) Details


Os.18074.1.A1_at

Description gb:CB670565
DB_XREF= gi:29674290
DB_XREF=OSJNEe03L07.r
CLONE=OSJNEe03L07
TID=Os.18074.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18074 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567905.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1725011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17210OsAffx.12083.1.S1_at11/112+9867022..9868131F-box domain containing protein
LOC_Os02g17220OsAffx.12084.1.S1_at11/112+9871117..9871782transposon protein, putative, unclassified
LOC_Os02g17230OsAffx.24289.1.S1_at10/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17230OsAffx.30914.1.S1_x_at1/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17240Os.8089.1.S1_at11/112+9885607..9888391pollen-specific kinase partner protein, putative, expressed
LOC_Os02g17250Os.18074.1.A1_at11/112+9888628..9893606expressed protein
LOC_Os02g17260OsAffx.24290.1.S1_at11/112+9894795..9895713hypothetical protein
LOC_Os02g17270OsAffx.24291.1.S1_at11/112+9898845..9899207hypothetical protein
LOC_Os02g17280Os.51013.1.S1_s_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.51013.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.52125.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17292Os.50288.2.S1_at11/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17292Os.50288.1.S1_at9/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18074.1.A1_at--74--4031Chr02:9889158..9889182 (25 bp)
CGTCTACTCTATCTTCTGATGATGA
LOC_Os02g17250
Os.18074.1.A1_at--741--6191Chr02:9889132..9889156 (25 bp)
GAGGAAGCTTCGGATGACTATATAG
LOC_Os02g17250
Os.18074.1.A1_at--441--2491Chr02:9889032..9889056 (25 bp)
AACAGATGTACATAGTGCTCCACTT
LOC_Os02g17250
Os.18074.1.A1_at--200--9111Chr02:9889017..9889041 (25 bp)
TGCTCCACTTATTCCTTGATGTTTG
LOC_Os02g17250
Os.18074.1.A1_at--423--3011Chr02:9888980..9889004 (25 bp)
AATGCTTGGCGTGGGTTTTGACTGC
LOC_Os02g17250
Os.18074.1.A1_at--100--7651Chr02:9888906..9888930 (25 bp)
GGGTTAGTTAGCCACTGAAGTTCAT
LOC_Os02g17250
Os.18074.1.A1_at--906--3031Chr02:9888842..9888866 (25 bp)
AATCCTTTGCCTTTCCATTGTTGGG
LOC_Os02g17250
Os.18074.1.A1_at--860--10671Chr02:9888830..9888854 (25 bp)
TTCCATTGTTGGGTCATACGTGTTG
LOC_Os02g17250
Os.18074.1.A1_at--297--10851Chr02:9888761..9888785 (25 bp)
TTGGTTGGTCTTTACTCTTGAGGCA
LOC_Os02g17250
Os.18074.1.A1_at--907--10751Chr02:9888744..9888768 (25 bp)
TTGAGGCAATTGCTTCCTTGTGACC
LOC_Os02g17250
Os.18074.1.A1_at--990--10671Chr02:9888731..9888755 (25 bp)
TTCCTTGTGACCTGAGATCTCTGAA
LOC_Os02g17250
Target Sequence 
CGTCTACTCTATCTTCTGATGATGAGGAGGAAGCTTCGGATGACTATATAGAGCACAATGTGCCTATCCCAACTGNGTCA
GTTCAAGTCAGGCAAGAGAATGATCTAGAGAGTTGACTAATGTATAAACAGATGTACATAGTGCTCCACTTATTCCTTGA
TGTTTGGTAATGTTTGTAAATGCTTGGCGTGGGTTTTGACTGCTAACAAGTGATTTTGTTTGTTCTTTTCCCCTAGAGGA
AACAAATGTTGAGGGTTAGTTAGCCACTGAAGTTCATACAAGAGGTTACCTTTTTTTCCCTGTACCCTTTCCTGTCAATC
CTTTGCCTTTCCATTGTTGGGTCATACGTGTTGGTGGAAGGAGTAAATAGCAAGCAGTTGGCAAAATGTTGTTGGGCTTG
GTTGGTCTTTACTCTTGAGGCAATTGCTTCCTTGTGACCTGAGATCTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18074.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis