Browse Element(s) Details


OsAffx.30914.1.S1_x_at

Description tigr:9639.m00961
TID=OsAffx.30914.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1017011/11Flavin-binding monooxygenase-like family protein
LOC_Os11g101405/11flavin-containing monooxygenase, putative
LOC_Os02g172301/11flavin-containing monooxygenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10140OsAffx.30914.1.S1_x_at5/1111+5486848..5488471flavin-containing monooxygenase, putative
LOC_Os11g10160NANA11+5494364..5507534expressed protein
LOC_Os11g10170OsAffx.30914.1.S1_x_at11/1111+5510051..5511767Flavin-binding monooxygenase-like family protein
LOC_Os11g10180Os.49909.1.S1_at11/1111+5514048..5517395F-box domain containing protein, expressed
LOC_Os11g10190NANA11+5517294..5520307transposon protein, putative, Mariner sub-class
LOC_Os11g10200Os.54051.1.S1_at10/1111+5525545..5529655F-box domain containing protein, expressed
LOC_Os11g10210NANA11+5536014..5536490hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30914.1.S1_x_at--955--833Chr11:5510637..5510661 (25 bp)
ATGGAGCCCACACCTCCATAGTTGT
LOC_Os11g10170
OsAffx.30914.1.S1_x_at--750--2152Chr11:5510646..5510670 (25 bp)
ACACCTCCATAGTTGTTCGTAGCCC
LOC_Os11g10170
OsAffx.30914.1.S1_x_at--171--8032Chr11:5511085..5511109 (25 bp)
GGAGACTTGTCAAAACATGGTATTA
LOC_Os11g10170
OsAffx.30914.1.S1_x_at--733--3292Chr11:5511192..5511212 (21 bp)
CAAAGGAGGAGTTATCAAAGTGTTC
LOC_Os11g10170
OsAffx.30914.1.S1_x_at--1061--6052Chr11:5511200..5511337 (25 bp)
GAGTTATCAAAGTGTTCCAAGGAAT
LOC_Os11g10170
OsAffx.30914.1.S1_x_at--367--9811Chr11:5511623..5511647 (25 bp)
TAAAAATTATTTTCCAAATCATTGG
LOC_Os11g10170
OsAffx.30914.1.S1_x_at--81--10811Chr11:5511663..5511687 (25 bp)
TTGTATTGTGCTGGGTTTGCTAGGA
LOC_Os11g10170
OsAffx.30914.1.S1_x_at--1049--10231Chr11:5511678..5511702 (25 bp)
TTTGCTAGGAGAGGATTGGCCGGTA
LOC_Os11g10170
OsAffx.30914.1.S1_x_at--1087--11Chr11:5511692..5511716 (25 bp)
ATTGGCCGGTATTGCCATGGATGCG
LOC_Os11g10170
OsAffx.30914.1.S1_x_at--488--4491Chr11:5511696..5511720 (25 bp)
GCCGGTATTGCCATGGATGCGAAAA
LOC_Os11g10170
OsAffx.30914.1.S1_x_at--397--4431Chr11:5511705..5511729 (25 bp)
GCCATGGATGCGAAAAATATTGCAA
LOC_Os11g10170
Target Sequence 
ATGGAGCCCACACCTCCATAGTTGTTCGTAGCCCGNTACACATNATGACCAAAGAACTAATANGNTNTGGGATGACANTG
GTNCAAAATNTAGGGCTAANNGTGACANCAGNGGANTCTCTTCTTGTNATGGCNGCAAATTTNTATTTNGGAGACTTGTC
AAAACATGGTATTANGAGGCCTAAAATNGGTCCTCTNTTACTNAANTCACAAACNGGCCGGTCNGCCGTNATNGATGTNG
GNACTGCAAGATTAATCAAAGGAGGAGTTATCAAAGTGTTCCAAGGAATATCNAAGATAAANACAAANAGTNTTGAATTT
CATGGTGGGANGCAAANTNCNTTTGANGCCATTGTATTTGCNACAGGNTACAAAAGCACAGTNAATNCATGGCTAAAGAA
NNNTNNAANNATNNNTNNNNNNNNTGGNTNNCCTAAAAATTATTTTCCAAATCATTGGAGAGGTGAAAATGGGTTGTATT
GTGCTGGGTTTGCTAGGAGAGGATTGGCCGGTATTGCCATGGATGCGAAAAATATTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30914.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis