Browse Element(s) Details


Os.54051.1.S1_at

Description gb:AK101566.1
DB_XREF= gi:32986775
TID=Os.54051.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050F09, full insert sequence.
FL= gb:AK101566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1020010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10160NANA11+5494364..5507534expressed protein
LOC_Os11g10170OsAffx.30914.1.S1_x_at11/1111+5510051..5511767Flavin-binding monooxygenase-like family protein
LOC_Os11g10180Os.49909.1.S1_at11/1111+5514048..5517395F-box domain containing protein, expressed
LOC_Os11g10190NANA11+5517294..5520307transposon protein, putative, Mariner sub-class
LOC_Os11g10200Os.54051.1.S1_at10/1111+5525545..5529655F-box domain containing protein, expressed
LOC_Os11g10210NANA11+5536014..5536490hypothetical protein
LOC_Os11g10220NANA11+5542304..5543858retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10230Os.2987.3.S1_x_at1/1111+5545600..5548415retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g10240Os.52549.1.S1_s_at11/1111+5552766..5555631F-box domain containing protein, expressed
LOC_Os11g10240Os.52549.1.S1_at9/1111+5552766..5555631F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54051.1.S1_at--577--2771Chr11:5527990..5528014 (25 bp)
AAGAGCCGTTTGTATCCAACCATCT
LOC_Os11g10200
Os.54051.1.S1_at--1135--5331Chr11:5527908..5527932 (25 bp)
GAAGACCCTGGGTACCTTTGGCATA
LOC_Os11g10200
Os.54051.1.S1_at--561--10211Chr11:5527892..5527916 (25 bp)
TTTGGCATACCCCTCGAGAAAATTA
LOC_Os11g10200
Os.54051.1.S1_at--148--7011Chr11:5527401..5527425 (25 bp)
GTACTGGTTTCAGCTGCTCCTAGAG
LOC_Os11g10200
Os.54051.1.S1_at--305--4791NONE
GCTCCTAGAGCCTTCTGGATCAAGA
NONE
Os.54051.1.S1_at--541--10191Chr11:5525857..5525881 (25 bp)
TATTCAGACGTATCCGTGGTGTTGC
LOC_Os11g10200
Os.54051.1.S1_at--966--7491Chr11:5525842..5525866 (25 bp)
GTGGTGTTGCAGTCCTCTTATTATA
LOC_Os11g10200
Os.54051.1.S1_at--691--2831Chr11:5525811..5525835 (25 bp)
AAGTAGTCTCATCGGATTTGGTTCC
LOC_Os11g10200
Os.54051.1.S1_at--960--7431Chr11:5525736..5525760 (25 bp)
GTGTAGCCTTGCAGTATGAGTCATA
LOC_Os11g10200
Os.54051.1.S1_at--878--2531Chr11:5525687..5525711 (25 bp)
AACTCGTATCGGTACCATATCTAGT
LOC_Os11g10200
Os.54051.1.S1_at--689--5471Chr11:5525570..5525594 (25 bp)
GAACTCGCCTTCTAAATCTGATGCA
LOC_Os11g10200
Target Sequence 
AAGAGCCGTTTGTATCCAACCATCTTAAGATTGTTGAAATTAAATGCAAAGGCAAAGAGGTCATGTGGGTTTGCAAATTC
TTGAAGACCCTGGGTACCTTTGGCATACCCCTCGAGAAAATTAACATCAAACTGACTAGTGAACACTGTCGATCTGAATG
TTTTAATTTTGTCTGTACTGGTTTCAGCTGCTCCTAGAGCCTTCTGGATCAAGAGGAGGTCGGAAGAATTGGGCCGTTGG
TGGATGAGATATCTCTTGAGATATTATTCAGACGTATCCGTGGTGTTGCAGTCCTCTTATTATATTGATTAAGTAGTCTC
ATCGGATTTGGTTCCATATTTACTATATTAGCGATATTAGAAGTACTCTTACATATTTGGCTAAAGTGTAGCCTTGCAGT
ATGAGTCATAGCTCTACTGCTTATGATGCTAAAGAACTCGTATCGGTACCATATCTAGTTCTGTATGTACGACATTATAA
GTAGCCTTATATATTATGCTAGTATAGCCTTGCAGGATGAGTGGTATAGCTCTGTTGCGTATGATGCTAAAGAACTCGCC
TTCTAAATCTGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis