Browse Element(s) Details


OsAffx.22372.1.S1_at

Description tigr:9635.m02555
TID=OsAffx.22372.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hexokinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2654011/11Hexokinase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26510OsAffx.24286.1.S1_at1/117+15273516..15277442retrotransposon protein, putative, unclassified
LOC_Os07g26510OsAffx.380.1.S1_at1/117+15273516..15277442retrotransposon protein, putative, unclassified
LOC_Os07g26520Os.7365.2.S1_x_at11/117+15278272..15281145expressed protein
LOC_Os07g26520Os.7365.1.S1_at11/117+15278272..15281145expressed protein
LOC_Os07g26530Os.19146.1.S1_at1/117+15283051..15283492hypothetical protein
LOC_Os07g26534NANA7+15288562..15290496NA
LOC_Os07g26540OsAffx.22372.1.S1_at11/117+15291521..15293017Hexokinase 1, putative
LOC_Os07g26550OsAffx.16424.1.S1_s_at11/117+15293198..15294636expressed protein
LOC_Os07g26560OsAffx.28601.1.S1_at11/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_x_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26570OsAffx.16425.1.S1_at11/117+15302826..15303435hypothetical protein
LOC_Os07g26579OsAffx.503.1.S1_at3/117+15304976..15305220NA
LOC_Os07g26590OsAffx.22370.1.S1_at7/117+15307222..15307476hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009747biological_processhexokinase-dependent signaling
GO:0010182biological_processsugar mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0004396molecular_functionhexokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22372.1.S1_at--375--5751Chr07:15292423..15292447 (25 bp)
GACGGAGTTCGACGAAGCACTCGAT
LOC_Os07g26540
OsAffx.22372.1.S1_at--348--1491Chr07:15292438..15292462 (25 bp)
AGCACTCGATCAGGAGAGCCTCAAC
LOC_Os07g26540
OsAffx.22372.1.S1_at--228--9451Chr07:15292447..15292471 (25 bp)
TCAGGAGAGCCTCAACCCCGGCGAG
LOC_Os07g26540
OsAffx.22372.1.S1_at--1004--9551Chr07:15292488..15292512 (25 bp)
TCATCTCCGGGATGTACCTCGGCGA
LOC_Os07g26540
OsAffx.22372.1.S1_at--181--1291Chr07:15292512..15292536 (25 bp)
AGATCGTCAGGAGGGTCCTCCTCAA
LOC_Os07g26540
OsAffx.22372.1.S1_at--693--971Chr07:15292520..15292544 (25 bp)
AGGAGGGTCCTCCTCAAGATCTCCT
LOC_Os07g26540
OsAffx.22372.1.S1_at--809--9631Chr07:15292599..15292623 (25 bp)
TCAGGACACCCGACGTGTCCGCGAT
LOC_Os07g26540
OsAffx.22372.1.S1_at--549--9451Chr07:15292656..15292680 (25 bp)
TCGGCGAGAAGCTGGAACGCACGCT
LOC_Os07g26540
OsAffx.22372.1.S1_at--1082--8591Chr07:15292716..15292740 (25 bp)
TGGTCGTCGAGGTGTGCGACATCGT
LOC_Os07g26540
OsAffx.22372.1.S1_at--112--8811Chr07:15292860..15292884 (25 bp)
TGTTCGAGCACTACGGCAAGTTCCG
LOC_Os07g26540
OsAffx.22372.1.S1_at--1099--2011Chr07:15292869..15292893 (25 bp)
ACTACGGCAAGTTCCGGCGGTGCAT
LOC_Os07g26540
Target Sequence 
GACGGAGTTCGACGAAGCACTCGATCAGGAGAGCCTCAACCCCGGCGAGCAGACCTACGAGAAGCTCATCTCCGGGATGT
ACCTCGGCGAGATCGTCAGGAGGGTCCTCCTCAAGATCTCCTCCCGGTGCCCCTCCCTCCTCGGCGGCGCCGGCGAGCTC
GCGACGCCGTTCGTCCTCAGGACACCCGACGTGTCCGCGATGCACCACGACGAGACGCCCGACCTGAGCATCGTCGGCGA
GAAGCTGGAACGCACGCTGGGCATCCGCGGCACGTCGCCGGAGGCGAGGAGGATGGTCGTCGAGGTGTGCGACATCGTCG
CCACGAGGGCCGCCCGGCTGGCCGCGGCGGGGATCGTCGGGATCCTGAAGAAGATCGGGAGGGTCGACGGCGGCGAGGGG
CGGAGGAGGAGGTCGGTGGTCGCCGTGGACGGCGGGCTGTTCGAGCACTACGGCAAGTTCCGGCGGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis