Browse Element(s) Details


OsAffx.22370.1.S1_at

Description gb:NM_187067.1
DB_XREF= gi:34901219
GEN=P0030H06.39
TID=OsAffx.22370.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0030H06.39), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g265907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26530Os.19146.1.S1_at1/117+15283051..15283492hypothetical protein
LOC_Os07g26534NANA7+15288562..15290496NA
LOC_Os07g26540OsAffx.22372.1.S1_at11/117+15291521..15293017Hexokinase 1, putative
LOC_Os07g26550OsAffx.16424.1.S1_s_at11/117+15293198..15294636expressed protein
LOC_Os07g26560OsAffx.28601.1.S1_at11/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_x_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26570OsAffx.16425.1.S1_at11/117+15302826..15303435hypothetical protein
LOC_Os07g26579OsAffx.503.1.S1_at3/117+15304976..15305220NA
LOC_Os07g26590OsAffx.22370.1.S1_at7/117+15307222..15307476hypothetical protein
LOC_Os07g26600OsAffx.5451.2.S1_s_at11/117+15319861..15321403hypothetical protein
LOC_Os07g26600OsAffx.5451.1.S1_x_at4/117+15319861..15321403hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22370.1.S1_at--587--291Chr07:15307256..15307280 (25 bp)
ATAGAGCCGAGGAGCGATCCCAGTC
LOC_Os07g26590
OsAffx.22370.1.S1_at--377--8991Chr07:15307301..15307325 (25 bp)
TGAAGCTACCATGGCCAAACCAACA
LOC_Os07g26590
OsAffx.22370.1.S1_at--982--371Chr07:15307327..15307351 (25 bp)
ATCAAAGCTGCCCTTTGCAGATCCG
LOC_Os07g26590
OsAffx.22370.1.S1_at--804--10271Chr07:15307340..15307364 (25 bp)
TTTGCAGATCCGACAGCGACACTGA
LOC_Os07g26590
OsAffx.22370.1.S1_at--86--1471Chr07:15307371..15307395 (25 bp)
AGAATGCCGCTCTTGTGGAGTGGTT
LOC_Os07g26590
OsAffx.22370.1.S1_at--10--1111Chr07:15307389..15307413 (25 bp)
AGTGGTTGCTGCGAGAAAGTTGAAC
LOC_Os07g26590
OsAffx.22370.1.S1_at--597--10731Chr07:15307408..15307432 (25 bp)
TTGAACAACCAACACAACCTCTTTG
LOC_Os07g26590
OsAffx.22370.1.S1_at--435--2091Chr07:15307632..15307656 (25 bp)
ACAACAGGATTTACCCGACTACGAG
NONE
OsAffx.22370.1.S1_at--674--6531Chr07:15307639..15307663 (25 bp)
GATTTACCCGACTACGAGACAAGCT
NONE
OsAffx.22370.1.S1_at--32--5991Chr07:15307654..15307678 (25 bp)
GAGACAAGCTCGACATGCCACCGGA
NONE
OsAffx.22370.1.S1_at--226--4091Chr07:15307693..15307717 (25 bp)
CGACCAACGGCCACCGGAGATGGAG
NONE
Target Sequence 
ATAGAGCCGAGGAGCGATCCCAGTCGGGGCCTCCGCTATGGAGGTTGAAGCTACCATGGCCAAACCAACAAATCAAAGCT
GCCCTTTGCAGATCCGACAGCGACACTGAAGAAAAAGAATGCCGCTCTTGTGGAGTGGTTGCTGCGAGAAAGTTGAACAA
CCAACACAACCTCTTTGCAAGAGAAACTGTTGAACTTCGAGCTNNNNANNNNNAAAANNNNAGACCCACAACAGGATTTA
CCCGACTACGAGACAAGCTCGACATGCCACCGGAGCCCCCCCTCCCGGCGACCAACGGCCACCGGAGATGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis