Browse Element(s) Details


Os.19146.1.S1_at

Description gb:BM420237
DB_XREF= gi:18387039
DB_XREF=U004G07
CLONE=U004G07
TID=Os.19146.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.19146 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g265301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26510OsAffx.24286.1.S1_at1/117+15273516..15277442retrotransposon protein, putative, unclassified
LOC_Os07g26510OsAffx.380.1.S1_at1/117+15273516..15277442retrotransposon protein, putative, unclassified
LOC_Os07g26520Os.7365.2.S1_x_at11/117+15278272..15281145expressed protein
LOC_Os07g26520Os.7365.1.S1_at11/117+15278272..15281145expressed protein
LOC_Os07g26530Os.19146.1.S1_at1/117+15283051..15283492hypothetical protein
LOC_Os07g26534NANA7+15288562..15290496NA
LOC_Os07g26540OsAffx.22372.1.S1_at11/117+15291521..15293017Hexokinase 1, putative
LOC_Os07g26550OsAffx.16424.1.S1_s_at11/117+15293198..15294636expressed protein
LOC_Os07g26560OsAffx.28601.1.S1_at11/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_x_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26570OsAffx.16425.1.S1_at11/117+15302826..15303435hypothetical protein
LOC_Os07g26579OsAffx.503.1.S1_at3/117+15304976..15305220NA
LOC_Os07g26590OsAffx.22370.1.S1_at7/117+15307222..15307476hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19146.1.S1_at--415--8411NONE
GGCCGGGACTCAAGCCGACGCGGGC
NONE
Os.19146.1.S1_at--657--1831NONE
ACGCGGGCGAGCAGGCCTCAGCTTC
NONE
Os.19146.1.S1_at--557--8631Chr01:8521688..8521712 (25 bp)
TGGGTGCACCCTCAGCCTCATGGAC
NONE
Os.19146.1.S1_at--416--10871Chr01:8521629..8521653 (25 bp)
TTGGCCGGCGTGGTCTGTCTGACAT
NONE
Os.19146.1.S1_at--739--9651Chr01:8521577..8521602 (25 bp)
TCAGCGTCCACGTCGGACAAACCGG
NONE
Os.19146.1.S1_at--279--7671Chr01:8521553..8521577 (25 bp)
GGGTTAAAACCACTGAGTGAATGGT
NONE
Os.19146.1.S1_at--135--4371Chr01:8521544..8521568 (25 bp)
CCACTGAGTGAATGGTTTGTAAGTT
NONE
Os.19146.1.S1_at--479--7851Chr01:8521531..8521555 (25 bp)
GGTTTGTAAGTTGAGGATGCCACGT
NONE
Os.19146.1.S1_at--363--8891Chr01:8521520..8521544 (25 bp)
TGAGGATGCCACGTATCTGGTTTTG
NONE
Os.19146.1.S1_at--115--10372Chr03:6573603..6573957 (25 bp)
TTTTTCCTTATATATCACAGCCCAA
NONE
Os.19146.1.S1_at--275--92512Chr07:12419660..12419681 (22 bp)
TCCTTATATATCACAGCCCAAAGAA
NONE
Target Sequence 
GGCCGGGACTCAAGCCGACGCGGGCGAGCAGGCCTCAGCTTCTTCCCGCCGGCCATCCCCAGCCAGCCACTGCGGAGACC
CCGCACCACCGCTGCAGGCGATGGTGCGCTTCCGCGACGCTGGGTGCACCCTCAGCCTCATGGACCGGCGCCGGTGAGGG
CGAGCGGCGCGGCCGGGACTTGGCCGGCGTGGTCTGTCTGACATGTGGGGCCCATGTGGGTCCCGCTGACTCAGCGTCCA
CGTCGGACAAACCGGGGTTAAAACCACTGAGTGAATGGTTTGTAAGTTGAGGATGCCACGTATCTGGTTTTGTAATTAGG
GGACGATTTTGTATCTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCCTTATATATCACAGCCCAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis