Browse Element(s) Details


OsAffx.16425.1.S1_at

Description tigr:9635.m02558
TID=OsAffx.16425.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2657011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26520Os.7365.2.S1_x_at11/117+15278272..15281145expressed protein
LOC_Os07g26520Os.7365.1.S1_at11/117+15278272..15281145expressed protein
LOC_Os07g26530Os.19146.1.S1_at1/117+15283051..15283492hypothetical protein
LOC_Os07g26534NANA7+15288562..15290496NA
LOC_Os07g26540OsAffx.22372.1.S1_at11/117+15291521..15293017Hexokinase 1, putative
LOC_Os07g26550OsAffx.16424.1.S1_s_at11/117+15293198..15294636expressed protein
LOC_Os07g26560OsAffx.28601.1.S1_at11/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_x_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26570OsAffx.16425.1.S1_at11/117+15302826..15303435hypothetical protein
LOC_Os07g26579OsAffx.503.1.S1_at3/117+15304976..15305220NA
LOC_Os07g26590OsAffx.22370.1.S1_at7/117+15307222..15307476hypothetical protein
LOC_Os07g26600OsAffx.5451.2.S1_s_at11/117+15319861..15321403hypothetical protein
LOC_Os07g26600OsAffx.5451.1.S1_x_at4/117+15319861..15321403hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16425.1.S1_at--1125--4451Chr07:15303381..15303405 (25 bp)
GCCTGCCTTTGGCACGGGAAAGATA
LOC_Os07g26570
OsAffx.16425.1.S1_at--1162--2311Chr07:15303363..15303387 (25 bp)
AAAGATAGTGTAGCGATGTGCGAGC
LOC_Os07g26570
OsAffx.16425.1.S1_at--1080--6011Chr07:15303256..15303280 (25 bp)
GAGAGGCATTGGATCTGGCGCTACC
LOC_Os07g26570
OsAffx.16425.1.S1_at--566--9451Chr07:15303243..15303267 (25 bp)
TCTGGCGCTACCGTGACGGGATATG
LOC_Os07g26570
OsAffx.16425.1.S1_at--304--7911Chr07:15303217..15303241 (25 bp)
GGTTCCCGACATGGGCCCTAGTGGA
LOC_Os07g26570
OsAffx.16425.1.S1_at--477--4171Chr07:15303157..15303181 (25 bp)
CGCCATGACCAGACTAGGCAGACTT
LOC_Os07g26570
OsAffx.16425.1.S1_at--958--10431Chr07:15303037..15303061 (25 bp)
TTAGCATGGGCACAGCAAGAGGCAA
LOC_Os07g26570
OsAffx.16425.1.S1_at--1148--2271Chr07:15303014..15303038 (25 bp)
AAATGTGTCCGGTGCCAGCAGGCGA
LOC_Os07g26570
OsAffx.16425.1.S1_at--132--7291Chr07:15303003..15303027 (25 bp)
GTGCCAGCAGGCGACCGGTGCAAAT
LOC_Os07g26570
OsAffx.16425.1.S1_at--405--4411Chr07:15302926..15302950 (25 bp)
GCCACTGTGGCGGAGATATGACTTG
LOC_Os07g26570
OsAffx.16425.1.S1_at--1004--6491Chr07:15302912..15302936 (25 bp)
GATATGACTTGGCAGAGGTTTGACT
LOC_Os07g26570
Target Sequence 
GCCTGCCTTTGGCACGGGAAAGATAGTGTAGCGATGTGCGAGCGGAGAAGGCGGCGCCATGGCGCGAGCAAAGATGGCGT
GGTGTGCAGCGGGAAGAGAGGGTGGCATTGTGGCGCGTGTGCGGTGAGAGGCATTGGATCTGGCGCTACCGTGACGGGAT
ATGGGGTTCCCGACATGGGCCCTAGTGGAGGCGTGGTGTGGGGCGGTGGCGCGGCGAGGGGCGCCGCCATGACCAGACTA
GGCAGACTTGGTGCCCCCATGGAGGGATCCAGCATGGAGCGCNNNGAGGTTAGCATGGGCACAGCAAGAGGCAAATGTGT
CCGGTGCCAGCAGGCGACCGGTGCAAATGAAGAGACTGGTGGTCGTGGTGGCGACAACAGGAGCTGGCTACCGGTGGGGC
GCCACTGTGGCGGAGATATGACTTGGCAGAGGTTTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis