Browse Element(s) Details


Os.7365.2.S1_x_at

Description gb:NM_187054.1
DB_XREF= gi:34901193
GEN=P0030H06.26
TID=Os.7365.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU100826(C51981)~unknown protein (P0030H06.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST AU100826(C51981)~unknown protein (P0030H06.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2652011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26510OsAffx.24286.1.S1_at1/117+15273516..15277442retrotransposon protein, putative, unclassified
LOC_Os07g26510OsAffx.380.1.S1_at1/117+15273516..15277442retrotransposon protein, putative, unclassified
LOC_Os07g26520Os.7365.2.S1_x_at11/117+15278272..15281145expressed protein
LOC_Os07g26520Os.7365.1.S1_at11/117+15278272..15281145expressed protein
LOC_Os07g26530Os.19146.1.S1_at1/117+15283051..15283492hypothetical protein
LOC_Os07g26534NANA7+15288562..15290496NA
LOC_Os07g26540OsAffx.22372.1.S1_at11/117+15291521..15293017Hexokinase 1, putative
LOC_Os07g26550OsAffx.16424.1.S1_s_at11/117+15293198..15294636expressed protein
LOC_Os07g26560OsAffx.28601.1.S1_at11/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_x_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26570OsAffx.16425.1.S1_at11/117+15302826..15303435hypothetical protein
LOC_Os07g26579OsAffx.503.1.S1_at3/117+15304976..15305220NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7365.2.S1_x_at--790--571Chr07:15280925..15280949 (25 bp)
ATCCATCTCTACAACGTCACCATGG
LOC_Os07g26520
Os.7365.2.S1_x_at--294--9851Chr07:15280916..15280940 (25 bp)
TACAACGTCACCATGGGCCTCTACA
LOC_Os07g26520
Os.7365.2.S1_x_at--783--7551Chr07:15280906..15280926 (21 bp)
GGGCCTCTACATGCTCGATTGTTTC
LOC_Os07g26520
Os.7365.2.S1_x_at--473--6531Chr07:15280565..15280587 (23 bp)
GATTGTTTCCCTTTAACTGGAGTAG
LOC_Os07g26520
Os.7365.2.S1_x_at--724--5671Chr07:15280541..15280565 (25 bp)
GACATAATGGTGCTGATTCTGCTCT
LOC_Os07g26520
Os.7365.2.S1_x_at--477--7311Chr07:15280532..15280556 (25 bp)
GTGCTGATTCTGCTCTGGTTCATCT
LOC_Os07g26520
Os.7365.2.S1_x_at--1035--8571Chr07:15280517..15280541 (25 bp)
TGGTTCATCTGCTTCAATGGCTCTC
LOC_Os07g26520
Os.7365.2.S1_x_at--214--2971Chr07:15280502..15280526 (25 bp)
AATGGCTCTCGCTTTGCCAGTGACG
LOC_Os07g26520
Os.7365.2.S1_x_at--958--4411Chr07:15280487..15280511 (25 bp)
GCCAGTGACGTCTTCGAGAGGTACA
LOC_Os07g26520
Os.7365.2.S1_x_at--1060--6011Chr07:15280472..15280496 (25 bp)
GAGAGGTACACATCCTATTCTCATC
LOC_Os07g26520
Os.7365.2.S1_x_at--403--571Chr07:15280461..15280485 (25 bp)
ATCCTATTCTCATCAAATACTGTGG
LOC_Os07g26520
Target Sequence 
ATCCATCTCTACAACGTCACCATGGGCCTCTACATGCTCGATTGTTTCCCTTTAACTGGAGTAGACATAATGGTGCTGAT
TCTGCTCTGGTTCATCTGCTTCAATGGCTCTCGCTTTGCCAGTGACGTCTTCGAGAGGTACACATCCTATTCTCATCAAA
TACTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7365.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis