Browse Element(s) Details


OsAffx.5451.1.S1_x_at

Description gb:NM_187070.1
DB_XREF= gi:34901225
TID=OsAffx.5451.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0030H06.42), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g266004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26560OsAffx.28601.1.S1_at11/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_x_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26570OsAffx.16425.1.S1_at11/117+15302826..15303435hypothetical protein
LOC_Os07g26579OsAffx.503.1.S1_at3/117+15304976..15305220NA
LOC_Os07g26590OsAffx.22370.1.S1_at7/117+15307222..15307476hypothetical protein
LOC_Os07g26600OsAffx.5451.2.S1_s_at11/117+15319861..15321403hypothetical protein
LOC_Os07g26600OsAffx.5451.1.S1_x_at4/117+15319861..15321403hypothetical protein
LOC_Os07g26610Os.16323.2.S1_x_at11/117+15337303..15349470phosphoglucomutase, putative, expressed
LOC_Os07g26610Os.16323.1.S1_at7/117+15337303..15349470phosphoglucomutase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5451.1.S1_x_at--313--6231Chr07:15321344..15321368 (25 bp)
GATGGAGATTGATCAGCTTAGGGTT
LOC_Os07g26600
OsAffx.5451.1.S1_x_at--75--1551Chr07:15321330..15321354 (25 bp)
AGCTTAGGGTTAGGGATGATCTCGA
LOC_Os07g26600
OsAffx.5451.1.S1_x_at--878--872Chr07:15321277..15321301 (25 bp)
ATGGCCAGGAAGCTGTTCCTGTACA
LOC_Os07g26600
OsAffx.5451.1.S1_x_at--362--2591Chr07:15321253..15321277 (25 bp)
AACGTCACCATTGGGCTGTACGGCT
LOC_Os07g26600
OsAffx.5451.1.S1_x_at--346--8331NONE
GGCTGTACGGCTTGGATTGTCTCTA
NONE
OsAffx.5451.1.S1_x_at--458--4931NONE
GCTTGGATTGTCTCTATGGTGTTAA
NONE
OsAffx.5451.1.S1_x_at--551--8691Chr07:15317074..15317097 (24 bp)
TGTCTCTATGGTGTTAAAGGATGTC
NONE
OsAffx.5451.1.S1_x_at--119--9851Chr07:15317060..15317084 (25 bp)
TAAAGGATGTCCTAGCTGGCCTACC
NONE
OsAffx.5451.1.S1_x_at--284--1632Chr11:25629449..25629473 (25 bp)
AGCTGGCCTACCGAGACTAGGACAA
NONE
OsAffx.5451.1.S1_x_at--377--5991Chr07:15317035..15317059 (25 bp)
GAGACTAGGACAAACCGGCGCGCAT
NONE
OsAffx.5451.1.S1_x_at--411--2631Chr07:15317023..15317047 (25 bp)
AACCGGCGCGCATTCACCCAGAGGG
NONE
Target Sequence 
GATGGAGATTGATCAGCTTAGGGTTAGGGATGATCTCGAGGAGGAGGAGGAGGATGAGATGAGCTGGATGGCCAGGAAGC
TGTTCCTGTACAACGTCACCATTGGGCTGTACGGCTTGGATTGTCTCTATGGTGTTAAAGGATGTCCTAGCTGGCCTACC
GAGACTAGGACAAACCGGCGCGCATTCACCCAGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5451.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis