Browse Element(s) Details


OsAffx.21116.1.S1_at

Description gb:NM_193941.1
DB_XREF= gi:34914965
GEN=OSJNBa0091E23.25
TID=OsAffx.21116.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0091E23.25 (OSJNBa0091E23.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g287009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28680Os.9116.1.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680OsAffx.21117.2.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_x_at10/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_at4/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28690Os.32272.1.S1_x_at11/111+16388813..16394523expressed protein
LOC_Os01g28690Os.32272.1.S1_s_at11/111+16388813..16394523expressed protein
LOC_Os01g28700OsAffx.21116.1.S1_at9/111+16398063..16398296hypothetical protein
LOC_Os01g28710NANA1+16406159..16406925hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_x_at10/111+16407486..16408674hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_at8/111+16407486..16408674hypothetical protein
LOC_Os01g28730OsAffx.23435.1.S1_at11/111+16413616..16415538serine/threonine protein kinase, putative, expressed
LOC_Os01g28740Os.41695.5.S1_x_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.15.S1_s_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.2.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.3.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.4.S1_x_at1/111+16416430..16421986transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21116.1.S1_at--549--9031Chr01:16398263..16398287 (25 bp)
TGCCGAAATTCGACAGGTGCCTATC
LOC_Os01g28700
OsAffx.21116.1.S1_at--1136--2371Chr01:16398238..16398262 (25 bp)
AAACGGCGAGTCTTCAACAGGTGGA
LOC_Os01g28700
OsAffx.21116.1.S1_at--670--8111Chr01:16398192..16398216 (25 bp)
GGACTGGACCTGTCGAACTACGAGT
LOC_Os01g28700
OsAffx.21116.1.S1_at--281--2531Chr01:16398177..16398201 (25 bp)
AACTACGAGTGTTCGACTGGGCCCA
LOC_Os01g28700
OsAffx.21116.1.S1_at--700--8651Chr01:16398160..16398184 (25 bp)
TGGGCCCACATCTGACAGTGTGCAA
LOC_Os01g28700
OsAffx.21116.1.S1_at--1113--7451Chr01:16398143..16398167 (25 bp)
GTGTGCAATGTCAACAGGTCCCAGC
LOC_Os01g28700
OsAffx.21116.1.S1_at--221--1031Chr01:16398128..16398152 (25 bp)
AGGTCCCAGCGCACAATATTGAACT
LOC_Os01g28700
OsAffx.21116.1.S1_at--244--5471Chr01:16398108..16398132 (25 bp)
GAACTGTGGCTGTCAACAGGTCCCT
LOC_Os01g28700
OsAffx.21116.1.S1_at--822--2452Chr06:2158470..2158699 (25 bp)
AACAATGGGTGTTCGACTGGCGGCT
NONE
OsAffx.21116.1.S1_at--1158--6171Chr01:16397989..16398013 (25 bp)
GAGGACCACCAAGTGTCTCATCGGG
NONE
OsAffx.21116.1.S1_at--60--6351Chr01:16397925..16397949 (25 bp)
GATGCGATGCCCATGACTATGCAGA
NONE
Target Sequence 
TGCCGAAATTCGACAGGTGCCTATCAAACGGCGAGTCTTCAACAGGTGGAAGCAATCGAACAAAAGGAGTTGGACTGGAC
CTGTCGAACTACGAGTGTTCGACTGGGCCCACATCTGACAGTGTGCAATGTCAACAGGTCCCAGCGCACAATATTGAACT
GTGGCTGTCAACAGGTCCCTGCGACTGCCCCTATCAAACAATGGGTGTTCGACTGGCGGCTTTAAATCCCCCTCTCCACC
CTTCGACAAGGGTCATTTTTGGAGTTGAGGGGGCGAGGACCACCAAGTGTCTCATCGGGCTGCCATCGTCGCGGGAGAGA
TCTGCGCGGCTGGAAGGGGATGCGATGCCCATGACTATGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis