Browse Element(s) Details


OsAffx.21117.2.S1_at

Description tigr:9629.m02746
TID=OsAffx.21117.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2868011/11LEC14B homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28640OsAffx.8876.1.S1_at11/111+16351833..16352405retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28650OsAffx.25778.2.S1_at9/111+16357073..16357549hypothetical protein
LOC_Os01g28660OsAffx.29218.1.S1_s_at2/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.380.1.S1_at2/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.2057.3.S1_at1/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.13325.1.S1_at1/111+16359956..16365764hypothetical protein
LOC_Os01g28670NANA1+16368048..16369095hypothetical protein
LOC_Os01g28680Os.9116.1.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680OsAffx.21117.2.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_x_at10/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_at4/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28690Os.32272.1.S1_x_at11/111+16388813..16394523expressed protein
LOC_Os01g28690Os.32272.1.S1_s_at11/111+16388813..16394523expressed protein
LOC_Os01g28700OsAffx.21116.1.S1_at9/111+16398063..16398296hypothetical protein
LOC_Os01g28710NANA1+16406159..16406925hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_x_at10/111+16407486..16408674hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_at8/111+16407486..16408674hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0009910biological_processnegative regulation of flower development
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21117.2.S1_at--122--10511Chr01:16377807..16377831 (25 bp)
TTCACGCTCATTCGGTATGAAACAG
LOC_Os01g28680
OsAffx.21117.2.S1_at--1120--2391Chr01:16377826..16377850 (25 bp)
AAACAGATGCATGACTGAGCTACAT
LOC_Os01g28680
OsAffx.21117.2.S1_at--489--5911Chr01:16377842..16377866 (25 bp)
GAGCTACATGCTTTTATTGTCAATG
LOC_Os01g28680
OsAffx.21117.2.S1_at--387--751Chr01:16377864..16377888 (25 bp)
ATGTATGACTGTTTTCTGTCCCACC
LOC_Os01g28680
OsAffx.21117.2.S1_at--1010--7231Chr01:16377881..16377905 (25 bp)
GTCCCACCAATTGATATCTGCACAT
LOC_Os01g28680
OsAffx.21117.2.S1_at--38--171Chr01:16377904..16377928 (25 bp)
ATTATCTTTTCTTCCGTGCATCATT
LOC_Os01g28680
OsAffx.21117.2.S1_at--301--9551Chr01:16377913..16377937 (25 bp)
TCTTCCGTGCATCATTACCATTTTG
LOC_Os01g28680
OsAffx.21117.2.S1_at--517--6731Chr01:16378009..16378033 (25 bp)
GTTCTTAGTGTAGCTTGATGCGTCA
LOC_Os01g28680
OsAffx.21117.2.S1_at--546--6351Chr01:16378025..16378049 (25 bp)
GATGCGTCACACTAACACAGTATAT
LOC_Os01g28680
OsAffx.21117.2.S1_at--321--7831Chr01:16378091..16378115 (25 bp)
GGTCACTGACAAAGGTTTCTGCCAT
LOC_Os01g28680
OsAffx.21117.2.S1_at--1097--1011Chr01:16378103..16378127 (25 bp)
AGGTTTCTGCCATTTTATTCTGAAG
LOC_Os01g28680
Target Sequence 
TTCACGCTCATTCGGTATGAAACAGATGCATGACTGAGCTACATGCTTTTATTGTCAATGTATGACTGTTTTCTGTCCCA
CCAATTGATATCTGCACATTATCTTTTCTTCCGTGCATCATTACCATTTTGAACAAGTGGTATTTACAATGTAATTAGAA
TAACACCATTTGTTTCTTTCTTAGATAACTTGATAAGATTAGGTTCTTAGTGTAGCTTGATGCGTCACACTAACACAGTA
TATACATATGGGAGGAATTTAAGACAAAAGGGATTGTAGGTCAAGGTCACTGACAAAGGTTTCTGCCATTTTATTCTGAA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21117.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis