Browse Element(s) Details


OsAffx.23436.1.S1_at

Description tigr:9629.m02758
TID=OsAffx.23436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2875011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28710NANA1+16406159..16406925hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_x_at10/111+16407486..16408674hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_at8/111+16407486..16408674hypothetical protein
LOC_Os01g28730OsAffx.23435.1.S1_at11/111+16413616..16415538serine/threonine protein kinase, putative, expressed
LOC_Os01g28740Os.41695.5.S1_x_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.15.S1_s_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.2.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.3.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.4.S1_x_at1/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28750OsAffx.23436.1.S1_at11/111+16431611..16433932hypothetical protein
LOC_Os01g28760OsAffx.4856.1.S1_x_at1/111+16435326..16438787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28770OsAffx.28887.2.S1_x_at2/111+16440198..16441465hypothetical protein
LOC_Os01g28780OsAffx.639.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28780OsAffx.2113.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28790Os.10162.1.S1_at11/111+16457381..16458225expressed protein
LOC_Os01g28790Os.46603.1.A1_x_at1/111+16457381..16458225expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23436.1.S1_at--641--3311Chr01:16433015..16433039 (25 bp)
CACATCCCATGTTTCGATCGTTGAA
LOC_Os01g28750
OsAffx.23436.1.S1_at--175--5771Chr01:16433030..16433054 (25 bp)
GATCGTTGAATCCTTACCGGAACCT
LOC_Os01g28750
OsAffx.23436.1.S1_at--321--3151Chr01:16433075..16433099 (25 bp)
AATTCAGCCTTTGGAATCCCTGTTC
LOC_Os01g28750
OsAffx.23436.1.S1_at--270--5871Chr01:16433447..16433471 (25 bp)
GAGCCCATTTGGTCCTATTATCGAA
LOC_Os01g28750
OsAffx.23436.1.S1_at--566--1772Chr11:15241545..15241565 (21 bp)
ACCGGAGTCCTCAACATCAAACTTG
NONE
OsAffx.23436.1.S1_at--1044--2951Chr01:16433638..16433662 (25 bp)
AATGGCATTTTCTGTCCTGATCTTT
LOC_Os01g28750
OsAffx.23436.1.S1_at--779--10551Chr01:16433674..16433698 (25 bp)
TTCTTTGGCAGAACTCATTCCCGAT
LOC_Os01g28750
OsAffx.23436.1.S1_at--665--10151Chr01:16433725..16433749 (25 bp)
TATCTCTTCATTTGAGTTCCCCGAA
LOC_Os01g28750
OsAffx.23436.1.S1_at--782--6311Chr01:16433765..16433789 (25 bp)
GATGCCAGTGCATTCGTCAAGGAGG
LOC_Os01g28750
OsAffx.23436.1.S1_at--146--10331Chr01:16433858..16433882 (25 bp)
TTTAAGCCTTCTCTATGCCTACTTG
LOC_Os01g28750
OsAffx.23436.1.S1_at--245--571Chr01:16433872..16433896 (25 bp)
ATGCCTACTTGCACGATGGTACGGA
LOC_Os01g28750
Target Sequence 
CACATCCCATGTTTCGATCGTTGAATCCTTACCGGAACCTCAGGAACCGAAGGTAGAAAAAATTCAGCCTTTGGAATCCC
TGTTCTTATTTGAGGGTGATCTTTTTGAAGATTATGGACACACCTCAAACAATTCCTGCCAAAAGAGACCACCAGTCCCA
CGAGACGAACTGTTGGCTCCAAGAGACAGAACTTCCCGGAGCCCATTTGGTCCTATTATCGAAGGTCATCCCATAGAGAA
ACTTCTCCTTGATGCTCCGCATACCGGAGTCCTCAACATCAAACTTGGGAAAATGGCATTTTCTGTCCTGATCTTTCGAT
CAAAAAATTCTTTGGCAGAACTCATTCCCGATTCCAAGCCAATTGAGGAAGTGTTGGCTATCTCTTCATTTGAGTTCCCC
GAATCCCTCCTAAAAGATGATGCCAGTGCATTCGTCAAGGAGGAGGACGATCCTAGAGAGGTGATCGAGTTACCCAAAAC
CGATCTGCCTTCACAACCTTTGGTTGAGCCCTTTAAGCCTTCTCTATGCCTACTTGCACGATGGTACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis