Browse Element(s) Details


Os.46603.1.A1_x_at

Description gb:NM_193949.1
DB_XREF= gi:34914981
GEN=OSJNBb0093M23.11
TID=Os.46603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0093M23.11 (OSJNBb0093M23.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0093M23.11 (OSJNBb0093M23.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g287901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28750OsAffx.23436.1.S1_at11/111+16431611..16433932hypothetical protein
LOC_Os01g28760OsAffx.4856.1.S1_x_at1/111+16435326..16438787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28770OsAffx.28887.2.S1_x_at2/111+16440198..16441465hypothetical protein
LOC_Os01g28780OsAffx.639.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28780OsAffx.2113.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28790Os.10162.1.S1_at11/111+16457381..16458225expressed protein
LOC_Os01g28790Os.46603.1.A1_x_at1/111+16457381..16458225expressed protein
LOC_Os01g28800OsAffx.23437.1.S1_at11/111+16461601..16462081retrotransposon, putative, centromere-specific
LOC_Os01g28810OsAffx.23438.1.S1_at9/111+16463090..16468000expressed protein
LOC_Os01g28820OsAffx.21110.1.S1_s_at11/111+16471696..16472100hypothetical protein
LOC_Os01g28830OsAffx.11248.1.S1_at11/111+16472672..16474341hypothetical protein
LOC_Os01g28830OsAffx.29962.1.S1_at1/111+16472672..16474341hypothetical protein
LOC_Os01g28840Os.33968.1.S1_at11/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g28840Os.5608.3.S1_x_at1/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46603.1.A1_x_at--572--4751Chr01:16457734..16457758 (25 bp)
GCAGTTCCCGTTCAGGAAGGCCGCC
LOC_Os01g28790
Os.46603.1.A1_x_at--240--4711NONE
GCTGGAGTACCGTTGCCGCTATCGT
NONE
Os.46603.1.A1_x_at--735--1891Chr01:16458604..16458628 (25 bp)
ACGTCATCGTTCTCTCGCATCATGG
NONE
Os.46603.1.A1_x_at--1101--4951Chr01:16458620..16458644 (25 bp)
GCATCATGGCGAGAGGGCACCGGGA
NONE
Os.46603.1.A1_x_at--907--2151Chr01:16458680..16458704 (25 bp)
ACAGCCTGCGGATCTGGGCAAGGCA
NONE
Os.46603.1.A1_x_at--910--7551Chr01:16458705..16458729 (25 bp)
GGGCGGCGGCCGGTAGATTAGAACA
NONE
Os.46603.1.A1_x_at--765--131Chr01:16458721..16458745 (25 bp)
ATTAGAACAGGGAAGGACCGCCGCT
NONE
Os.46603.1.A1_x_at--323--9337Chr06:1253375..1253851 (25 bp)
TCGCCGGAGGTCGTCATCGTTGTCG
NONE
Os.46603.1.A1_x_at--1146--8031Chr01:16458937..16458961 (25 bp)
GGAGAGTGGTCGTCCCCGAATCCGC
NONE
Os.46603.1.A1_x_at--609--9371Chr01:16458946..16458970 (25 bp)
TCGTCCCCGAATCCGCGCTGGGAAG
NONE
Os.46603.1.A1_x_at--220--8491Chr01:16458964..16458988 (25 bp)
TGGGAAGGGCCGTCGTCCCCAGATC
NONE
Target Sequence 
GCAGTTCCCGTTCAGGAAGGCCGCCGTCACAGCCGCCGTCGATGACGCCGCGACGCGCGACCTCCGCCGCATGCTGCGGC
TGGAGTACCGTTGCCGCTATCGTCGACGTCATCGTTCTCTCGCATCATGGCGAGAGGGCACCGGGAGGGCCACCGCCGGT
GAATCGGGGCGGGGAAGGGCGACAGCCTGCGGATCTGGGCAAGGCAGGGCGGCGGCCGGTAGATTAGAACAGGGAAGGAC
CGCCGCTGGCGAATCAGGGCGGGGAAGGGCGGTGGTCGGTGGTTCCGGGCGGGGGAGGGCCGCCGCCGTCGCCCACGCCC
GCCCTCAATGTGGCCCTCGCCCACCGCTGCCGCCGAAATCCGCGTCGCCGGAGGTCGTCATCGTTGTCGAGGTCATCGTC
GTCGCGGGGGAGGGCACCTCCGCCGGATCCGCGTGGGGGGAGAGTGGTCGTCCCCGAATCCGCGCTGGGAAGGGCCGTCG
TCCCCAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46603.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis