Browse Element(s) Details


OsAffx.639.1.S1_at

Description gb:NM_193948.1
DB_XREF= gi:34914979
GEN=OSJNBb0093M23.10
TID=OsAffx.639.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0093M23.10 (OSJNBb0093M23.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2878011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28750OsAffx.23436.1.S1_at11/111+16431611..16433932hypothetical protein
LOC_Os01g28760OsAffx.4856.1.S1_x_at1/111+16435326..16438787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28770OsAffx.28887.2.S1_x_at2/111+16440198..16441465hypothetical protein
LOC_Os01g28780OsAffx.639.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28780OsAffx.2113.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28790Os.10162.1.S1_at11/111+16457381..16458225expressed protein
LOC_Os01g28790Os.46603.1.A1_x_at1/111+16457381..16458225expressed protein
LOC_Os01g28800OsAffx.23437.1.S1_at11/111+16461601..16462081retrotransposon, putative, centromere-specific
LOC_Os01g28810OsAffx.23438.1.S1_at9/111+16463090..16468000expressed protein
LOC_Os01g28820OsAffx.21110.1.S1_s_at11/111+16471696..16472100hypothetical protein
LOC_Os01g28830OsAffx.11248.1.S1_at11/111+16472672..16474341hypothetical protein
LOC_Os01g28830OsAffx.29962.1.S1_at1/111+16472672..16474341hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.639.1.S1_at--659--6311Chr01:16449663..16449687 (25 bp)
GATGCGGACAGGTTCGGCAAAGTCA
LOC_Os01g28780
OsAffx.639.1.S1_at--493--4911Chr01:16449632..16449656 (25 bp)
GCTTCGCTGGTACTTTGAGAGGTCC
LOC_Os01g28780
OsAffx.639.1.S1_at--231--10251Chr01:16449619..16449643 (25 bp)
TTTGAGAGGTCCTGGCTAACGCCTA
LOC_Os01g28780
OsAffx.639.1.S1_at--918--1031Chr01:16449613..16449637 (25 bp)
AGGTCCTGGCTAACGCCTAGCGATG
LOC_Os01g28780
OsAffx.639.1.S1_at--543--7791Chr01:16449569..16449593 (25 bp)
GGTCCCGAGCGCTGTTTATAAGCCA
LOC_Os01g28780
OsAffx.639.1.S1_at--739--4071Chr01:16449564..16449588 (25 bp)
CGAGCGCTGTTTATAAGCCATCGGG
LOC_Os01g28780
OsAffx.639.1.S1_at--658--3911Chr01:16449513..16449537 (25 bp)
CGGCACCATCAATGGCCCCGATTTG
LOC_Os01g28780
OsAffx.639.1.S1_at--561--9731Chr01:16449505..16449529 (25 bp)
TCAATGGCCCCGATTTGCCGGCGGC
LOC_Os01g28780
OsAffx.639.1.S1_at--578--10291Chr01:16449492..16449516 (25 bp)
TTTGCCGGCGGCCAAATGACAACCA
LOC_Os01g28780
OsAffx.639.1.S1_at--324--3252Chr09:5032164..5032183 (20 bp)
CAACCAATTAATTCGCACAACGCCG
NONE
OsAffx.639.1.S1_at--477--9691Chr01:16449465..16449489 (25 bp)
TAATTCGCACAACGCCGTTCGTGGG
LOC_Os01g28780
Target Sequence 
GATGCGGACAGGTTCGGCAAAGTCAGTGGTGGCTTCGCTGGTACTTTGAGAGGTCCTGGCTAACGCCTAGCGATGGCGGT
CAGGAGGAGAGGGGGGTCCCGAGCGCTGTTTATAAGCCATCGGGGGAGAGGAGCCGTGGAGGAGCTCGGCCGGCACCATC
AATGGCCCCGATTTGCCGGCGGCCAAATGACAACCAATTAATTCGCACAACGCCGTTCGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis