Browse Element(s) Details


OsAffx.29962.1.S1_at

Description tigr:9637.m01851
TID=OsAffx.29962.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2149011/11hypothetical protein
LOC_Os01g288301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21430OsAffx.29961.1.S1_at11/119+12950142..12960778hAT family dimerisation domain containing protein
LOC_Os09g21440NANA9+12964495..12964924hypothetical protein
LOC_Os09g21450OsAffx.17826.1.S1_at3/119+12968477..12970904Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g21460Os.49191.1.S1_at11/119+12974277..12976292expressed protein
LOC_Os09g21470Os.54451.1.S1_at8/119+12976798..12979465expressed protein
LOC_Os09g21480OsAffx.17827.1.S1_at11/119+12982386..12982823hypothetical protein
LOC_Os09g21490OsAffx.29962.1.S1_at11/119+12985633..12987417hypothetical protein
LOC_Os09g21500OsAffx.29963.1.S1_at11/119+12988778..12989560hypothetical protein
LOC_Os09g21510OsAffx.29964.2.S1_x_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21510OsAffx.29964.1.S1_s_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21510OsAffx.29964.2.S1_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009067biological_processaspartate family amino acid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29962.1.S1_at--333--7871Chr09:12985751..12985775 (25 bp)
GGTTTGTTCAACGACTAGCTGAGAC
LOC_Os09g21490
OsAffx.29962.1.S1_at--122--191Chr09:12985838..12985862 (25 bp)
ATTTCTCTGCAGCTACAACCTTGAA
LOC_Os09g21490
OsAffx.29962.1.S1_at--99--311Chr09:12987076..12987100 (25 bp)
ATAGCTGTTGGAGGCTTGTCATGGA
LOC_Os09g21490
OsAffx.29962.1.S1_at--504--9633Chr09:12987094..12987118 (25 bp)
TCATGGAGGGCCTTCAGCCGAACCT
LOC_Os09g21490
OsAffx.29962.1.S1_at--1001--2711Chr09:12987137..12987161 (25 bp)
AAGCAATATGCTCACGCCGAAGGTG
LOC_Os09g21490
OsAffx.29962.1.S1_at--303--1694Chr09:12987183..12987207 (25 bp)
AGCCATACGGGCGAAAGCCGTGACT
LOC_Os09g21490
OsAffx.29962.1.S1_at--847--7034Chr09:12987212..12987236 (25 bp)
GTAACACCACCTTCGCCAAGTGGAG
LOC_Os09g21490
OsAffx.29962.1.S1_at--453--3213Chr09:12987228..12987252 (25 bp)
CAAGTGGAGTTCTCGGCAGAAGGCA
LOC_Os09g21490
OsAffx.29962.1.S1_at--690--151Chr09:12987307..12987331 (25 bp)
ATAGCACCAAACCTCGTTGACGGGA
LOC_Os09g21490
OsAffx.29962.1.S1_at--689--8031Chr09:12987329..12987353 (25 bp)
GGAGATTTGGTGGACTGCTACGCCC
LOC_Os09g21490
OsAffx.29962.1.S1_at--185--10654Chr09:12987363..12987387 (25 bp)
TTCGCCAGATAGATGGGCCGAGCTA
LOC_Os09g21490
Target Sequence 
GGTTTGTTCAACGACTAGCTGAGACAATAGGGTTTATTACGAGTACACCTGAAAACATTCCTACAACCTTGAAAAGATAT
AGAAGTGATTTCTCTGCAGCTACAACCTTGAAAAGATATAGAAGTGATTTCTCTGCAGCCATAATTAGTAAACTTGTTAA
GGCTGGATCGAAAAGATATAAATTTATAGCTGTTGGAGGCTTGTCATGGAGGGCCTTCAGCCGAACCTGCCGAAACCAAA
AAGTTCAAGCAATATGCTCACGCCGAAGGTGGGCAGCGAAAGACAAGAGCGAAGCCATACGGGCGAAAGCCGTGACTGGG
GGTAACACCACCTTCGCCAAGTGGAGTTCTCGGCAGAAGGCAGCACGGGCGAAGATGATGTGGCGAAAGCCTCGGCACAC
GGGCACGGGTTTCGCCATAGCACCAAACCTCGTTGACGGGAGATTTGGTGGACTGCTACGCCCTCGGGGGATTTCGCCAG
ATAGATGGGCCGAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis