Browse Element(s) Details


OsAffx.29961.1.S1_at

Description tigr:9637.m01846
TID=OsAffx.29961.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2143011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21410OsAffx.17824.1.S1_at11/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.45902.1.A1_x_at4/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410OsAffx.10222.1.S1_x_at2/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.56372.1.S1_at1/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21420OsAffx.17825.1.S1_at11/119+12934735..12943506hAT family dimerisation domain containing protein
LOC_Os09g21430OsAffx.29961.1.S1_at11/119+12950142..12960778hAT family dimerisation domain containing protein
LOC_Os09g21440NANA9+12964495..12964924hypothetical protein
LOC_Os09g21450OsAffx.17826.1.S1_at3/119+12968477..12970904Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g21460Os.49191.1.S1_at11/119+12974277..12976292expressed protein
LOC_Os09g21470Os.54451.1.S1_at8/119+12976798..12979465expressed protein
LOC_Os09g21480OsAffx.17827.1.S1_at11/119+12982386..12982823hypothetical protein
LOC_Os09g21490OsAffx.29962.1.S1_at11/119+12985633..12987417hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29961.1.S1_at--121--591Chr09:12950708..12950732 (25 bp)
ATGCCAAATTTTCCCTGTCCTGTGG
LOC_Os09g21430
OsAffx.29961.1.S1_at--436--8711Chr09:12950693..12950717 (25 bp)
TGTCCTGTGGACCTATTTTACATGG
LOC_Os09g21430
OsAffx.29961.1.S1_at--501--6291Chr09:12950621..12950645 (25 bp)
GATGATTCATTTTCCACTGTGGTAA
LOC_Os09g21430
OsAffx.29961.1.S1_at--454--2391Chr09:12950564..12950588 (25 bp)
AAACTCTGCTGCTTACATTTCTATT
LOC_Os09g21430
OsAffx.29961.1.S1_at--913--8451Chr09:12950539..12950563 (25 bp)
TGGCCATGGTTGTTGATCCTTCGCA
LOC_Os09g21430
OsAffx.29961.1.S1_at--410--10631Chr09:12950520..12950544 (25 bp)
TTCGCACCGTCTGGAACACATCAAG
LOC_Os09g21430
OsAffx.29961.1.S1_at--153--6851Chr09:12950496..12950520 (25 bp)
GTTTCGTGTTAGACTGCACACTGAC
LOC_Os09g21430
OsAffx.29961.1.S1_at--781--6511Chr09:12950447..12950471 (25 bp)
GATATATTTCTGAACCTCTTCGATG
LOC_Os09g21430
OsAffx.29961.1.S1_at--990--5431Chr09:12950436..12950460 (25 bp)
GAACCTCTTCGATGAATATTCTGGC
LOC_Os09g21430
OsAffx.29961.1.S1_at--499--3731Chr09:12950398..12950422 (25 bp)
CTAACTGTACTTCCGAGACTAGAAC
LOC_Os09g21430
OsAffx.29961.1.S1_at--796--10731Chr09:12950276..12950300 (25 bp)
TTGCAAGAGCCACGTCTATCTGGTG
LOC_Os09g21430
Target Sequence 
ATGCCAAATTTTCCCTGTCCTGTGGACCTATTTTACATGGTGTGGAAAGTCAAACGTGATTTGCAACGCGAAGTTGATAA
CAACAGGGATGATTCATTTTCCACTGTGGTAAAGAAAATGCAAGAGAAGTTCAAGAACTGCTGGAAACTCTGCTGCTTAC
ATTTCTATTTGGCCATGGTTGTTGATCCTTCGCACCGTCTGGAACACATCAAGTTTCGTGTTAGACTGCACACTGACACA
GATTATATTCACTATATGCATGATATATTTCTGAACCTCTTCGATGAATATTCTGGCAAGGTGGAAGATACTAACTGTAC
TTCCGAGACTAGAACAGAAGTTGGTGTGGATGGAGGTGATGATCGGTTGAAATATTACCGTCGGTACGAAAATCCAATTT
GTGAACGACCAATGACTGAGCTTGATCAGTACTTGCAAGAGCCACGTCTATCTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis