Browse Element(s) Details


OsAffx.17826.1.S1_at

Description tigr:9637.m01847
TID=OsAffx.17826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cyclin, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g214503/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21420OsAffx.17825.1.S1_at11/119+12934735..12943506hAT family dimerisation domain containing protein
LOC_Os09g21430OsAffx.29961.1.S1_at11/119+12950142..12960778hAT family dimerisation domain containing protein
LOC_Os09g21440NANA9+12964495..12964924hypothetical protein
LOC_Os09g21450OsAffx.17826.1.S1_at3/119+12968477..12970904Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g21460Os.49191.1.S1_at11/119+12974277..12976292expressed protein
LOC_Os09g21470Os.54451.1.S1_at8/119+12976798..12979465expressed protein
LOC_Os09g21480OsAffx.17827.1.S1_at11/119+12982386..12982823hypothetical protein
LOC_Os09g21490OsAffx.29962.1.S1_at11/119+12985633..12987417hypothetical protein
LOC_Os09g21500OsAffx.29963.1.S1_at11/119+12988778..12989560hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009744biological_processresponse to sucrose stimulus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17826.1.S1_at--807--4231Chr09:12970492..12970516 (25 bp)
CCGAGTCGGTCTCATGGATTCTCAA
LOC_Os09g21450
OsAffx.17826.1.S1_at--792--1331Chr09:12970166..12970190 (25 bp)
AGAGTACAACGGATTCCTTCCCTTG
LOC_Os09g21450
OsAffx.17826.1.S1_at--129--4171NONE
CGCCATCTGCCGGAGGGTCAAGGAT
NONE
OsAffx.17826.1.S1_at--1017--3192Chr11:13999146..13999165 (20 bp)
CAATGCAGTTGCTAGCTGTGGCCTG
NONE
OsAffx.17826.1.S1_at--188--5131Chr09:12968412..12968436 (25 bp)
GCAAATTCAGACATCCAGTTCTTGG
NONE
OsAffx.17826.1.S1_at--207--1411Chr09:12968336..12968360 (25 bp)
AGACACCGTCGCTCGCATTCGTAAA
NONE
OsAffx.17826.1.S1_at--605--10611Chr09:12968319..12968343 (25 bp)
TTCGTAAACCCTGAGCTTGCAGTCA
NONE
OsAffx.17826.1.S1_at--400--3451Chr09:12968300..12968324 (25 bp)
CAGTCAATTGGTGCATTGGCCTTGC
NONE
OsAffx.17826.1.S1_at--2--5331Chr09:12968179..12968203 (25 bp)
GAAGGGATCAGCAGCTGCTACCAAC
NONE
OsAffx.17826.1.S1_at--949--5051Chr09:12968104..12968128 (25 bp)
GCAGCAGTTAACCTGTTCTCAGATG
NONE
OsAffx.17826.1.S1_at--172--1071Chr09:12968079..12968103 (25 bp)
AGGGTCTGTCATATGATTCCTCCTC
NONE
Target Sequence 
CCGAGTCGGTCTCATGGATTCTCAAGGTGCAAGAGTACAACGGATTCCTTCCCTTGACGGCCTACCTCGCCGTCAACTAC
ATGGACCGGTTCCTCTCCCTCCGCCATCTGCCGGAGGGTCAAGGATGGGCAATGCAGTTGCTAGCTGTGGCCTGCCTCTC
ATTGGCTGCCAAGATGGAGGAAACCCTAGTTCCCTCCCTCCTGGACCTACAGGCAAGTAGAGTGCTCAAGCACATTTCTA
ATGCAATGGTGCAAAATGCAAATTCAGACATCCAGTTCTTGGATCACTGCCCGTCGTCAATGGCTGCTGCCGCAGTGCTG
TGCGCCACCGGTGAGACACCGTCGCTCGCATTCGTAAACCCTGAGCTTGCAGTCAATTGGTGCATTGGCCTTGCAGAGGA
AGGGATCAGCAGCTGCTACCAACTAATGCAGCAGCTGGTAATTGGAAATGTACAGAGGTCAGCAGCAGCAGCAGCAGCAG
TTAACCTGTTCTCAGATGAGGGTCTGTCATATGATTCCTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis