Browse Element(s) Details


OsAffx.17827.1.S1_at

Description tigr:9637.m01850
TID=OsAffx.17827.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2148011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21430OsAffx.29961.1.S1_at11/119+12950142..12960778hAT family dimerisation domain containing protein
LOC_Os09g21440NANA9+12964495..12964924hypothetical protein
LOC_Os09g21450OsAffx.17826.1.S1_at3/119+12968477..12970904Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g21460Os.49191.1.S1_at11/119+12974277..12976292expressed protein
LOC_Os09g21470Os.54451.1.S1_at8/119+12976798..12979465expressed protein
LOC_Os09g21480OsAffx.17827.1.S1_at11/119+12982386..12982823hypothetical protein
LOC_Os09g21490OsAffx.29962.1.S1_at11/119+12985633..12987417hypothetical protein
LOC_Os09g21500OsAffx.29963.1.S1_at11/119+12988778..12989560hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17827.1.S1_at--659--1631Chr09:12982763..12982787 (25 bp)
AGCGTGGACCACTTACAGAAGCATT
LOC_Os09g21480
OsAffx.17827.1.S1_at--116--9871Chr09:12982750..12982774 (25 bp)
TACAGAAGCATTTCCTCGTCGTGGC
LOC_Os09g21480
OsAffx.17827.1.S1_at--1026--9391Chr09:12982735..12982759 (25 bp)
TCGTCGTGGCTCTCGAGTTCTCGCC
LOC_Os09g21480
OsAffx.17827.1.S1_at--853--1211Chr09:12982690..12982714 (25 bp)
AGTTCACGGCCGTAGCGACCAACGA
LOC_Os09g21480
OsAffx.17827.1.S1_at--373--4431Chr09:12982589..12982613 (25 bp)
GCCATGTACTACGTGAAGCCTCGAG
LOC_Os09g21480
OsAffx.17827.1.S1_at--1146--1671Chr09:12982573..12982597 (25 bp)
AGCCTCGAGATAGGGTGGCTTCCAA
LOC_Os09g21480
OsAffx.17827.1.S1_at--1075--271Chr09:12982564..12982588 (25 bp)
ATAGGGTGGCTTCCAAGATCTTGGT
LOC_Os09g21480
OsAffx.17827.1.S1_at--426--431Chr09:12982547..12982571 (25 bp)
ATCTTGGTGCTTAAGCTGGACCTCT
LOC_Os09g21480
OsAffx.17827.1.S1_at--68--8211Chr09:12982531..12982555 (25 bp)
TGGACCTCTTGAAACGGGCCAGGGT
LOC_Os09g21480
OsAffx.17827.1.S1_at--996--9431Chr09:12982489..12982513 (25 bp)
TCGGCGAGAGGTCCTTTTTCTTGGC
LOC_Os09g21480
OsAffx.17827.1.S1_at--1134--4211Chr09:12982465..12982489 (25 bp)
CCGCGTCGTCGAAGTTCGGAGCGTC
LOC_Os09g21480
Target Sequence 
AGCGTGGACCACTTACAGAAGCATTTCCTCGTCGTGGCTCTCGAGTTCTCGCCGGTGGACGGCGCCGCCCCGCAGTTCAC
GGCCGTAGCGACCAACGACACGGAGCACACGCCGGCAGGGCACTCCAGGACGGTGTTTAGGGCGGTGGAATCCGTCGGGG
AGCTGTTCTTGGTCGCCATGTACTACGTGAAGCCTCGAGATAGGGTGGCTTCCAAGATCTTGGTGCTTAAGCTGGACCTC
TTGAAACGGGCCAGGGTGGAGGTGATGAGCACGCTCGGCGAGAGGTCCTTTTTCTTGGCCGCGTCGTCGAAGTTCGGAGC
GTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis