Browse Element(s) Details


Os.54451.1.S1_at

Description gb:AK105199.1
DB_XREF= gi:32990408
TID=Os.54451.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A05, full insert sequence.
FL= gb:AK105199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g214708/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21430OsAffx.29961.1.S1_at11/119+12950142..12960778hAT family dimerisation domain containing protein
LOC_Os09g21440NANA9+12964495..12964924hypothetical protein
LOC_Os09g21450OsAffx.17826.1.S1_at3/119+12968477..12970904Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g21460Os.49191.1.S1_at11/119+12974277..12976292expressed protein
LOC_Os09g21470Os.54451.1.S1_at8/119+12976798..12979465expressed protein
LOC_Os09g21480OsAffx.17827.1.S1_at11/119+12982386..12982823hypothetical protein
LOC_Os09g21490OsAffx.29962.1.S1_at11/119+12985633..12987417hypothetical protein
LOC_Os09g21500OsAffx.29963.1.S1_at11/119+12988778..12989560hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54451.1.S1_at--703--9451Chr09:12979285..12979304 (20 bp)
TCGGCGCACGCGAGAAAGCGCTTTT
LOC_Os09g21470
Os.54451.1.S1_at--604--5551Chr05:17325369..17325816 (25 bp)
GAAAGCGCTTTTGGAGGAGGATACT
NONE
Os.54451.1.S1_at--428--2751Chr09:12978086..12978110 (25 bp)
AAGAACAGTGTGAAACAGGTCTCAA
LOC_Os09g21470
Os.54451.1.S1_at--569--2491Chr09:12978073..12978097 (25 bp)
AACAGGTCTCAAAGGTTGGGAATAT
LOC_Os09g21470
Os.54451.1.S1_at--816--10831Chr09:12978058..12978082 (25 bp)
TTGGGAATATTCTTACCGGCGTTGT
LOC_Os09g21470
Os.54451.1.S1_at--1003--10451Chr09:12978050..12978070 (21 bp)
TTACCGGCGTTGTCCTTTTTGCCTG
LOC_Os09g21470
Os.54451.1.S1_at--446--8711NONE
TGTCCTTTTTGCCTGCGCCTATGAG
NONE
Os.54451.1.S1_at--141--9031Chr09:12976972..12976996 (25 bp)
TGCACCTCCGGTGTTGATGGTAATA
LOC_Os09g21470
Os.54451.1.S1_at--448--8451Chr09:12976893..12976917 (25 bp)
TGGCCTAGTGTTACATGTAAACGAA
LOC_Os09g21470
Os.54451.1.S1_at--249--10751Chr09:12976825..12976849 (25 bp)
TTGACTTGCACGCTCAAAGCACAAT
LOC_Os09g21470
Os.54451.1.S1_at--251--3111Chr09:12976798..12976822 (25 bp)
AATAGTTCATCTCGGTTTGCTTGCT
NONE
Target Sequence 
TCGGCGCACGCGAGAAAGCGCTTTTGGAGGAGGATACTGCTCTGAAGAGGTTTAAATCATATAAGAACAGTGTGAAACAG
GTCTCAAAGGTTGGGAATATTCTTACCGGCGTTGTCCTTTTTGCCTGCGCCTATGAGATCGTTGCACTGGCAAATAGTTA
AATATGAAGGAATGGACACTCGTGTGATCACTGAAATCCACCAGAAAGTGATTCATCAGCATAAATTGGCATTTTGTCAG
CACTAGTTCTGCACCTCCGGTGTTGATGGTAATATGTAAAATAAAACAAACTAGGTTAACCTTCTTTCGTAAGATCTTTG
TGCTCTCTTGGCCTAGTGTTACATGTAAACGAATTGATGTATGCGATGAATGATCATCGCCTTTGTTTTCTTTTCCTTGA
CTTGCACGCTCAAAGCACAATAAAATAGTTCATCTCGGTTTGCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis