Browse Element(s) Details


OsAffx.17825.1.S1_at

Description tigr:9637.m01845
TID=OsAffx.17825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2142011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21380Os.55241.1.S1_x_at11/119+12912670..12913862expressed protein
LOC_Os09g21390OsAffx.24532.1.A1_at2/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21390Os.54381.1.S1_at1/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21400OsAffx.17823.1.S1_at11/119+12919183..12921875hypothetical protein
LOC_Os09g21410OsAffx.17824.1.S1_at11/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.45902.1.A1_x_at4/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410OsAffx.10222.1.S1_x_at2/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.56372.1.S1_at1/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21420OsAffx.17825.1.S1_at11/119+12934735..12943506hAT family dimerisation domain containing protein
LOC_Os09g21430OsAffx.29961.1.S1_at11/119+12950142..12960778hAT family dimerisation domain containing protein
LOC_Os09g21440NANA9+12964495..12964924hypothetical protein
LOC_Os09g21450OsAffx.17826.1.S1_at3/119+12968477..12970904Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17825.1.S1_at--689--5571Chr09:12935350..12935374 (25 bp)
GAAAGTCTGTTGCTTACATATCTGC
LOC_Os09g21420
OsAffx.17825.1.S1_at--94--2851Chr09:12935283..12935307 (25 bp)
AAGTCACATATTCCGCTTGATTTGG
LOC_Os09g21420
OsAffx.17825.1.S1_at--615--8951Chr09:12935224..12935248 (25 bp)
TGACATATTACTCAGGCTCTTCCAT
LOC_Os09g21420
OsAffx.17825.1.S1_at--254--4191Chr09:12935176..12935200 (25 bp)
CCCTAACTGCACTTCTAGTTCTGAA
LOC_Os09g21420
OsAffx.17825.1.S1_at--418--1211Chr09:12935160..12935184 (25 bp)
AGTTCTGAAACTAGTGGCGGGCATT
LOC_Os09g21420
OsAffx.17825.1.S1_at--16--8371Chr09:12935145..12935169 (25 bp)
GGCGGGCATTCTTTGTATCCAGATG
LOC_Os09g21420
OsAffx.17825.1.S1_at--162--7871Chr09:12935113..12935137 (25 bp)
GGTATTTCATTACCTTGGTTCTGAA
LOC_Os09g21420
OsAffx.17825.1.S1_at--481--5191Chr09:12935091..12935115 (25 bp)
GAATTTCCACAGTGGTGGCGACCGA
LOC_Os09g21420
OsAffx.17825.1.S1_at--732--8211Chr09:12934942..12934966 (25 bp)
GGCAATACCTTACGGTGCTGATTAT
LOC_Os09g21420
OsAffx.17825.1.S1_at--1085--8111Chr09:12934904..12934928 (25 bp)
GGACTGCAAAACTCGCACTTGTTGA
LOC_Os09g21420
OsAffx.17825.1.S1_at--121--5371Chr09:12934857..12934881 (25 bp)
GAAGAGCTTGTCTGTACTCAGGATT
LOC_Os09g21420
Target Sequence 
GAAAGTCTGTTGCTTACATATCTGCATGCCTATGATCATAGATCCTAAATACCGCCTGGAAATCATCAAGTCACATATTC
CGCTTGATTTGGACAATGACATGATAGATTATATTGAAGAAGTAAATGACATATTACTCAGGCTCTTCCATGAATATTCT
GGTCAGGTTGAAGACCCTAACTGCACTTCTAGTTCTGAAACTAGTGGCGGGCATTCTTTGTATCCAGATGACAAGTTGGT
ATTTCATTACCTTGGTTCTGAATTTCCACAGTGGTGGCGACCGATGACTGAACTTGATCAGTATTTGCAAGATCCATGTC
TCTCAAACGATAGGATCGATGTTCTGCGATGGTGGAAGGAACATAGTATGATATATCCTACAATCTCTCGGATAGCACGT
GACATATTGGCAATACCTTACGGTGCTGATTATGAGGTAGCAACAAGGACTGCAAAACTCGCACTTGTTGAGTCAGATGG
TAGCCACTTTGTTGAAGAGCTTGTCTGTACTCAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis