Browse Element(s) Details


OsAffx.17823.1.S1_at

Description tigr:9637.m01843
TID=OsAffx.17823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT003157 At3g42170
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2140011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21360NANA9+12891978..12896016expressed protein
LOC_Os09g21370Os.17577.1.S1_x_at11/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370Os.17577.1.S2_at11/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370OsAffx.18976.1.S1_x_at6/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370OsAffx.18976.1.S1_at1/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21380Os.55241.1.S1_x_at11/119+12912670..12913862expressed protein
LOC_Os09g21390OsAffx.24532.1.A1_at2/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21390Os.54381.1.S1_at1/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21400OsAffx.17823.1.S1_at11/119+12919183..12921875hypothetical protein
LOC_Os09g21410OsAffx.17824.1.S1_at11/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.45902.1.A1_x_at4/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410OsAffx.10222.1.S1_x_at2/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.56372.1.S1_at1/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21420OsAffx.17825.1.S1_at11/119+12934735..12943506hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17823.1.S1_at--560--351Chr09:12919734..12919758 (25 bp)
ATAATGCACAATTTTCCCTGTCCCG
LOC_Os09g21400
OsAffx.17823.1.S1_at--252--8711Chr09:12919716..12919740 (25 bp)
TGTCCCGTGGACCTCTTTGAGAAGG
LOC_Os09g21400
OsAffx.17823.1.S1_at--24--1691Chr09:12919666..12919690 (25 bp)
ACGCAAAGTTGATAACCCCAGGGAT
LOC_Os09g21400
OsAffx.17823.1.S1_at--228--1811Chr09:12919652..12919676 (25 bp)
ACCCCAGGGATGATGCATTTGCTAC
LOC_Os09g21400
OsAffx.17823.1.S1_at--870--3011Chr09:12919595..12919619 (25 bp)
AATGCTGGAAACTTTGTTGCTTACA
LOC_Os09g21400
OsAffx.17823.1.S1_at--1033--871Chr09:12919563..12919587 (25 bp)
ATGGCCATGATCGTTGATCCTTCAT
LOC_Os09g21400
OsAffx.17823.1.S1_at--248--8851Chr09:12919549..12919573 (25 bp)
TGATCCTTCATATCGTCTGGAAAAC
LOC_Os09g21400
OsAffx.17823.1.S1_at--951--2391Chr09:12919521..12919545 (25 bp)
AAACTTCATGTTGACCTGCACACTG
LOC_Os09g21400
OsAffx.17823.1.S1_at--812--6511Chr09:12919470..12919494 (25 bp)
GATATATTGCTCAGGCTCTTTGATG
LOC_Os09g21400
OsAffx.17823.1.S1_at--217--151Chr09:12919358..12919382 (25 bp)
ATTACCGTCGTTATGGATATCCAAT
LOC_Os09g21400
OsAffx.17823.1.S1_at--760--2771Chr09:12919295..12919319 (25 bp)
AAGAGCCATGCCTCTCTGGAGGTGA
LOC_Os09g21400
Target Sequence 
ATAATGCACAATTTTCCCTGTCCCGTGGACCTCTTTGAGAAGGTGTGGCAAGTCAAATGTAATTTGCAACGCAAAGTTGA
TAACCCCAGGGATGATGCATTTGCTACTGTGGTAAAGAAGATGCAAGAGAAGTTCAAGAAATGCTGGAAACTTTGTTGCT
TACATTTCTATATGGCCATGATCGTTGATCCTTCATATCGTCTGGAAAACATCAAACTTCATGTTGACCTGCACACTGAC
ACAGATTATATTCGTTGTATGGATGATATATTGCTCAGGCTCTTTGATGAATATTCTGGCAAGGTGGAAGATTCTAACTG
TACTAAGGAGACTAGAAATGAAATCAATGTGAGCAGAGATGATGATCGGTTGAAATATTACCGTCGTTATGGATATCCAA
TTTGTGAGCGACCGATGACTGAGCTTGATCAGTACTTGCAAGAGCCATGCCTCTCTGGAGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis