Browse Element(s) Details


Os.55241.1.S1_x_at

Description gb:AK107716.1
DB_XREF= gi:32992925
TID=Os.55241.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E04, full insert sequence.
FL= gb:AK107716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2138011/11expressed protein
LOC_Os12g318701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21350NANA9+12889630..12891480retrotransposon protein, putative, LINE subclass
LOC_Os09g21360NANA9+12891978..12896016expressed protein
LOC_Os09g21370Os.17577.1.S1_x_at11/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370Os.17577.1.S2_at11/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370OsAffx.18976.1.S1_x_at6/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370OsAffx.18976.1.S1_at1/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21380Os.55241.1.S1_x_at11/119+12912670..12913862expressed protein
LOC_Os09g21390OsAffx.24532.1.A1_at2/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21390Os.54381.1.S1_at1/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21400OsAffx.17823.1.S1_at11/119+12919183..12921875hypothetical protein
LOC_Os09g21410OsAffx.17824.1.S1_at11/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.45902.1.A1_x_at4/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410OsAffx.10222.1.S1_x_at2/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.56372.1.S1_at1/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21420OsAffx.17825.1.S1_at11/119+12934735..12943506hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55241.1.S1_x_at--392--8011Chr09:12913050..12913074 (25 bp)
GGAGGCGGCGCCAAGATCACCAGGG
LOC_Os09g21380
Os.55241.1.S1_x_at--607--4551Chr09:12913057..12913081 (25 bp)
GCGCCAAGATCACCAGGGTCAAGCT
LOC_Os09g21380
Os.55241.1.S1_x_at--647--7691Chr09:12913072..12913096 (25 bp)
GGGTCAAGCTCCTCAAGCCCAAGGA
LOC_Os09g21380
Os.55241.1.S1_x_at--610--951Chr09:12913093..12913117 (25 bp)
AGGACACGCTCCTCCTCGGCCAGGT
LOC_Os09g21380
Os.55241.1.S1_x_at--677--9312Chr09:12912741..12913241 (25 bp)
TCCCAAGAGGTGACGAAGGCGCTGC
LOC_Os09g21380
Os.55241.1.S1_x_at--305--5351Chr09:12913258..12913282 (25 bp)
GAAGATGCGGCGGTGCGAGGCCATC
LOC_Os09g21380
Os.55241.1.S1_x_at--1154--4612Chr09:12913272..12913296 (25 bp)
GCGAGGCCATCAGGCAGCAGCACGA
LOC_Os09g21380
Os.55241.1.S1_x_at--1123--6191Chr09:12913308..12913332 (25 bp)
GAGGCGACCCGCTCGCTGGCGTAGC
LOC_Os09g21380
Os.55241.1.S1_x_at--140--4231Chr09:12913316..12913340 (25 bp)
CCGCTCGCTGGCGTAGCCGAGGAGG
LOC_Os09g21380
Os.55241.1.S1_x_at--255--6011Chr09:12913352..12913373 (22 bp)
GAGAGCGCCTCCGACGATCAGGACG
LOC_Os09g21380
Os.55241.1.S1_x_at--452--4731Chr09:12913646..12913670 (25 bp)
GCTGTATTGTCTGGTTTTCTTTTCT
LOC_Os09g21380
Target Sequence 
GGAGGCGGCGCCAAGATCACCAGGGTCAAGCTCCTCAAGCCCAAGGACACGCTCCTCCTCGGCCAGGTCTACCGCCTCAT
CACCTCCCAAGAGGTGACGAAGGCGCTGCGGGCGAGGAAGAACGAGAAGATGCGGCGGTGCGAGGCCATCAGGCAGCAGC
ACGAGCAGCTCCGGCGAGGCGACCCGCTCGCTGGCGTAGCCGAGGAGGAGGAGGAGGAGGAGAGCGCCTCCGACGATCAG
GACGGGAAGAGGGACCGGCACCGGAGCTCCGGCGCCGGCGCGCCGCCGGCCGCCGGCGGCAGAGGCCGGCACTGGCGGCC
GTCGCTGCAGAGCATCTCCGAGGCCGCGAGCCAGAGCGGCGGCGGCGGCGGCGGCAGCAGCATCTCTGAATCCGCCGCAA
GATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55241.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis