Browse Element(s) Details


Os.17577.1.S1_x_at

Description gb:AK121482.1
DB_XREF= gi:37991105
TID=Os.17577.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149L10, full insert sequence.
FL= gb:AK071091.1 gb:AK070060.1 gb:AK121482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2137011/11Papain family cysteine protease containing protein, expressed
LOC_Os11g237709/11Ananain precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21340Os.4936.1.S1_at11/119+12883070..12887548Permease I, putative, expressed
LOC_Os09g21350NANA9+12889630..12891480retrotransposon protein, putative, LINE subclass
LOC_Os09g21360NANA9+12891978..12896016expressed protein
LOC_Os09g21370Os.17577.1.S1_x_at11/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370Os.17577.1.S2_at11/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370OsAffx.18976.1.S1_x_at6/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370OsAffx.18976.1.S1_at1/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21380Os.55241.1.S1_x_at11/119+12912670..12913862expressed protein
LOC_Os09g21390OsAffx.24532.1.A1_at2/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21390Os.54381.1.S1_at1/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21400OsAffx.17823.1.S1_at11/119+12919183..12921875hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17577.1.S1_x_at--383--5432Chr11:12942610..12942634 (25 bp)
GAACGCGTACTTACCCACAAGTTAG
LOC_Os11g23770
Os.17577.1.S1_x_at--570--3292Chr11:12942625..12942649 (25 bp)
CACAAGTTAGGTGCATGCCATGGCA
LOC_Os11g23770
Os.17577.1.S1_x_at--521--851Chr09:12898461..12898485 (25 bp)
ATGGCACCATTCATGGCGTGCGCCT
LOC_Os09g21370
Os.17577.1.S1_x_at--393--5031Chr09:12898352..12898376 (25 bp)
GCAGTTGCTTGGACGTCGGCGACAT
LOC_Os09g21370
Os.17577.1.S1_x_at--1101--8872Chr11:12942783..12942807 (25 bp)
TGATGGACAGGTTCCGCGCTTGGCA
LOC_Os11g23770
Os.17577.1.S1_x_at--83--8272Chr11:12942804..12942828 (25 bp)
GGCAGGGAGCTCACAACCGGTCGTA
LOC_Os11g23770
Os.17577.1.S1_x_at--553--4252Chr11:12942820..12942844 (25 bp)
CCGGTCGTACCCGAGCGCAGAAGAG
LOC_Os11g23770
Os.17577.1.S1_x_at--752--4572Chr11:12942845..12942869 (25 bp)
GCGCTGCAGCGGTTCGATGTGTACC
LOC_Os11g23770
Os.17577.1.S1_x_at--750--6692Chr11:12942856..12942880 (25 bp)
GTTCGATGTGTACCGCCGCAACGCG
LOC_Os11g23770
Os.17577.1.S1_x_at--192--9672Chr11:12942915..12942939 (25 bp)
TCACTTACCAGCTCGCCGAGAACGA
LOC_Os11g23770
Os.17577.1.S1_x_at--491--1412Chr11:12942933..12942957 (25 bp)
AGAACGAGTTCGCAGACCTCACCGA
LOC_Os11g23770
Target Sequence 
GAACGCGTACTTACCCACAAGTTAGGTGCATGCCATGGCACCATTCATGGCGTGCGCCTCGCCACCGGTACTCACGCTGG
CCCTGCTCGCNTCGTGCGGTGCCCTTCTCGCCACCTCCATGCTCCCGGCGCGTGCNACGGCGGGCAGTTGCTTGGACGTC
GGCGACATGGTGATGATGGACAGGTTCCGCGCTTGGCAGGGAGCTCACAACCGGTCGTACCCGAGCGCAGAAGAGGCGCT
GCAGCGGTTCGATGTGTACCGCCGCAACGCGNAGTTCATCGACGCCGTCAACCTGCGCGGCGACCTCACTTACCAGCTCG
CCGAGAACGAGTTCGCAGACCTCACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17577.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis