Browse Element(s) Details


OsAffx.24532.1.A1_at

Description tigr:9630.m03049
TID=OsAffx.24532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g213902/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21350NANA9+12889630..12891480retrotransposon protein, putative, LINE subclass
LOC_Os09g21360NANA9+12891978..12896016expressed protein
LOC_Os09g21370Os.17577.1.S1_x_at11/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370Os.17577.1.S2_at11/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370OsAffx.18976.1.S1_x_at6/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370OsAffx.18976.1.S1_at1/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21380Os.55241.1.S1_x_at11/119+12912670..12913862expressed protein
LOC_Os09g21390OsAffx.24532.1.A1_at2/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21390Os.54381.1.S1_at1/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21400OsAffx.17823.1.S1_at11/119+12919183..12921875hypothetical protein
LOC_Os09g21410OsAffx.17824.1.S1_at11/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.45902.1.A1_x_at4/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410OsAffx.10222.1.S1_x_at2/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.56372.1.S1_at1/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21420OsAffx.17825.1.S1_at11/119+12934735..12943506hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24532.1.A1_at--428--2113Chr09:12917370..12917477 (25 bp)
ACATGAGTCTCAGCCTCCCACTTGT
LOC_Os09g21390
OsAffx.24532.1.A1_at--89--9331NONE
TCCCACTTGTCTTCATGGCCACTGT
NONE
OsAffx.24532.1.A1_at--580--2071Chr02:19025954..19026421 (25 bp)
ACTTGTCTTCATGGCCACTGTTCGT
NONE
OsAffx.24532.1.A1_at--32--8731Chr02:19025951..19026418 (25 bp)
TGTCTTCATGGCCACTGTTCGTACT
NONE
OsAffx.24532.1.A1_at--579--3492Chr09:12916982..12917047 (25 bp)
CATGGCCACTGTTCGTACTCTTGTA
LOC_Os09g21390
OsAffx.24532.1.A1_at--23--891Chr02:19025944..19025968 (25 bp)
ATGGCCACTGTTCGTACTCTTGTAG
NONE
OsAffx.24532.1.A1_at--877--8431Chr02:19025942..19025966 (25 bp)
GGCCACTGTTCGTACTCTTGTAGCT
NONE
OsAffx.24532.1.A1_at--356--4371Chr02:19025940..19025964 (25 bp)
CCACTGTTCGTACTCTTGTAGCTGT
NONE
OsAffx.24532.1.A1_at--1131--1951Chr02:19025938..19025962 (25 bp)
ACTGTTCGTACTCTTGTAGCTGTGG
NONE
OsAffx.24532.1.A1_at--75--8811Chr02:19025936..19025960 (25 bp)
TGTTCGTACTCTTGTAGCTGTGGCA
NONE
OsAffx.24532.1.A1_at--858--6711Chr02:19025935..19025959 (25 bp)
GTTCGTACTCTTGTAGCTGTGGCAG
NONE
Target Sequence 
ACATGAGTCTCAGCCTCCCACTTGTCTTCATGGCCACTGTTCGTACTCTTGTAGCTGTGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24532.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis