Browse Element(s) Details


OsAffx.29964.1.S1_s_at

Description tigr:9637.m01853
TID=OsAffx.29964.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2151011/11Mitogen-activated protein kinase kinase kinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21490OsAffx.29962.1.S1_at11/119+12985633..12987417hypothetical protein
LOC_Os09g21500OsAffx.29963.1.S1_at11/119+12988778..12989560hypothetical protein
LOC_Os09g21510OsAffx.29964.2.S1_x_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21510OsAffx.29964.1.S1_s_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21510OsAffx.29964.2.S1_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21520Os.6554.1.S1_at11/119+13017786..13022095DEAD/DEAH box helicase, putative, expressed
LOC_Os09g21530OsAffx.8939.1.S1_at2/119+13027416..13028164hypothetical protein
LOC_Os09g21530OsAffx.1436.1.S1_x_at1/119+13027416..13028164hypothetical protein
LOC_Os09g21530OsAffx.8939.1.S1_x_at1/119+13027416..13028164hypothetical protein
LOC_Os09g21540OsAffx.17829.1.S1_at11/119+13031510..13034727hypothetical protein
LOC_Os09g21540OsAffx.21754.1.S1_x_at2/119+13031510..13034727hypothetical protein
LOC_Os09g21550OsAffx.29965.1.S1_at11/119+13036226..13037434hypothetical protein
LOC_Os09g21560Os.47463.1.S1_x_at6/119+13040006..13043703transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g21560Os.14491.2.S1_x_at5/119+13040006..13043703transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006979biological_processresponse to oxidative stress
GO:0009908biological_processflower development
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29964.1.S1_s_at--985--7591Chr09:13014661..13014685 (25 bp)
GGGCAATCCGCATAGAATCCTCGTT
LOC_Os09g21510
OsAffx.29964.1.S1_s_at--388--551Chr09:13014666..13014690 (25 bp)
ATCCGCATAGAATCCTCGTTGAAGT
LOC_Os09g21510
OsAffx.29964.1.S1_s_at--1139--551Chr09:13014677..13014701 (25 bp)
ATCCTCGTTGAAGTGTACCGATGCT
LOC_Os09g21510
OsAffx.29964.1.S1_s_at--496--1691Chr09:13014707..13014731 (25 bp)
AGCCATCACGGCTGATCAGGATCAT
LOC_Os09g21510
OsAffx.29964.1.S1_s_at--186--6431Chr09:13014726..13014750 (25 bp)
GATCATTATCGTGGTATTGCCTGGA
LOC_Os09g21510
OsAffx.29964.1.S1_s_at--796--6871Chr09:13014739..13014763 (25 bp)
GTATTGCCTGGAAAACGTTGTGCTG
LOC_Os09g21510
OsAffx.29964.1.S1_s_at--839--4031Chr09:13014754..13014778 (25 bp)
CGTTGTGCTGGAGTAGTTCTTTGCT
LOC_Os09g21510
OsAffx.29964.1.S1_s_at--743--6931Chr09:13014766..13014790 (25 bp)
GTAGTTCTTTGCTGGCGAGGCTGCA
LOC_Os09g21510
OsAffx.29964.1.S1_s_at--765--4711Chr09:13014776..13014800 (25 bp)
GCTGGCGAGGCTGCATTTTTCATTT
LOC_Os09g21510
OsAffx.29964.1.S1_s_at--622--711Chr09:13014809..13014833 (25 bp)
ATGATGTGTGCTGTTTAGCCGCATA
LOC_Os09g21510
OsAffx.29964.1.S1_s_at--151--6831Chr09:13014821..13014845 (25 bp)
GTTTAGCCGCATAGTTGATATTGGA
LOC_Os09g21510
Target Sequence 
GGGCAATCCGCATAGAATCCTCGTTGAAGTGTACCGATGCTGGGGCAGCCATCACGGCTGATCAGGATCATTATCGTGGT
ATTGCCTGGAAAACGTTGTGCTGGAGTAGTTCTTTGCTGGCGAGGCTGCATTTTTCATTTTTTTTTTCATGATGTGTGCT
GTTTAGCCGCATAGTTGATATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29964.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis