Browse Element(s) Details


OsAffx.29965.1.S1_at

Description tigr:9637.m01859
TID=OsAffx.29965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2155011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21510OsAffx.29964.2.S1_x_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21510OsAffx.29964.1.S1_s_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21510OsAffx.29964.2.S1_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21520Os.6554.1.S1_at11/119+13017786..13022095DEAD/DEAH box helicase, putative, expressed
LOC_Os09g21530OsAffx.8939.1.S1_at2/119+13027416..13028164hypothetical protein
LOC_Os09g21530OsAffx.1436.1.S1_x_at1/119+13027416..13028164hypothetical protein
LOC_Os09g21530OsAffx.8939.1.S1_x_at1/119+13027416..13028164hypothetical protein
LOC_Os09g21540OsAffx.17829.1.S1_at11/119+13031510..13034727hypothetical protein
LOC_Os09g21540OsAffx.21754.1.S1_x_at2/119+13031510..13034727hypothetical protein
LOC_Os09g21550OsAffx.29965.1.S1_at11/119+13036226..13037434hypothetical protein
LOC_Os09g21560Os.47463.1.S1_x_at6/119+13040006..13043703transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g21560Os.14491.2.S1_x_at5/119+13040006..13043703transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g21570NANA9+13046789..13050121transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29965.1.S1_at--629--5631Chr09:13037092..13037116 (25 bp)
GACACTGTGTTCTTCTACAGTATAA
LOC_Os09g21550
OsAffx.29965.1.S1_at--587--8211Chr09:13037036..13037060 (25 bp)
GGAATTCAATACACACTTCTACTGG
LOC_Os09g21550
OsAffx.29965.1.S1_at--640--10551Chr09:13037020..13037044 (25 bp)
TTCTACTGGACCACACCACAGGGCT
LOC_Os09g21550
OsAffx.29965.1.S1_at--375--6671Chr09:13036994..13037018 (25 bp)
GTTGCTTATGGTGCATCCTGAATCA
LOC_Os09g21550
OsAffx.29965.1.S1_at--387--2831Chr09:13036965..13036989 (25 bp)
AAGTTTTCTTATGGAGTCCCTTCAT
LOC_Os09g21550
OsAffx.29965.1.S1_at--882--10091Chr09:13036956..13036980 (25 bp)
TATGGAGTCCCTTCATAGATCAGAG
LOC_Os09g21550
OsAffx.29965.1.S1_at--197--6451Chr09:13036939..13036963 (25 bp)
GATCAGAGGATCAACCTTCCATTTG
LOC_Os09g21550
OsAffx.29965.1.S1_at--1074--6291Chr09:13036516..13036939 (25 bp)
GATGAAGACGTGTTATGTGCTCAAA
LOC_Os09g21550
OsAffx.29965.1.S1_at--1004--2891Chr09:13036492..13036516 (25 bp)
AAGGTTTCGCAGATTGAAGTTCACA
LOC_Os09g21550
OsAffx.29965.1.S1_at--1004--6571Chr09:13036393..13036417 (25 bp)
GATTCTGGAGTATCAGCATCACTCA
LOC_Os09g21550
OsAffx.29965.1.S1_at--1021--5471Chr09:13036281..13036305 (25 bp)
GAACTACTAGCGTACACAATCCAGG
LOC_Os09g21550
Target Sequence 
GACACTGTGTTCTTCTACAGTATAACCAAAAGACAATTGATGTCCGAAAGAGTGGAGGAATTCAATACACACTTCTACTG
GACCACACCACAGGGCTGGTTGCTTATGGTGCATCCTGAATCACATAAAGTTTTCTTATGGAGTCCCTTCATAGATCAGA
GGATCAACCTTCCATTTGATGAAGACGTGTTATGTGCTCAAAAGGTTTCGCAGATTGAAGTTCACAAGCTCGATTTATCT
AGAAGAATTTGGGTGAAAGTTAGCACAATTGGTAACATGGCATTTTTTGTTGACAGTACTGATTCTGGAGTATCAGCATC
ACTCAATGCAGAAGATGTTGGATTAAAGAGAAATTGTATTTATTATGTGAGACCTAAAGATAAGGGATTATATATTTATG
ACATAGAAAGAGGAACTACTAGCGTACACAATCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis