Browse Element(s) Details


Os.6554.1.S1_at

Description gb:AK103385.1
DB_XREF= gi:32988594
TID=Os.6554.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127H01, full insert sequence.
FL= gb:AK103385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2152011/11DEAD/DEAH box helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21510OsAffx.29964.2.S1_x_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21510OsAffx.29964.1.S1_s_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21510OsAffx.29964.2.S1_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21520Os.6554.1.S1_at11/119+13017786..13022095DEAD/DEAH box helicase, putative, expressed
LOC_Os09g21530OsAffx.8939.1.S1_at2/119+13027416..13028164hypothetical protein
LOC_Os09g21530OsAffx.1436.1.S1_x_at1/119+13027416..13028164hypothetical protein
LOC_Os09g21530OsAffx.8939.1.S1_x_at1/119+13027416..13028164hypothetical protein
LOC_Os09g21540OsAffx.17829.1.S1_at11/119+13031510..13034727hypothetical protein
LOC_Os09g21540OsAffx.21754.1.S1_x_at2/119+13031510..13034727hypothetical protein
LOC_Os09g21550OsAffx.29965.1.S1_at11/119+13036226..13037434hypothetical protein
LOC_Os09g21560Os.47463.1.S1_x_at6/119+13040006..13043703transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g21560Os.14491.2.S1_x_at5/119+13040006..13043703transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g21570NANA9+13046789..13050121transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6554.1.S1_at--723--3311Chr09:13021534..13021558 (25 bp)
CACAGTTCTTTTTTGGTGTTATCTC
LOC_Os09g21520
Os.6554.1.S1_at--387--10611Chr09:13021572..13021596 (25 bp)
TTCTGTTACCTCTAGGCGGAGTTTG
LOC_Os09g21520
Os.6554.1.S1_at--520--9111Chr09:13021595..13021619 (25 bp)
TGCTGCCTGTGCTGTTGATTTTTTG
LOC_Os09g21520
Os.6554.1.S1_at--899--10251Chr09:13021616..13021640 (25 bp)
TTTGCATAGGGTGGGTCGCACAGCC
LOC_Os09g21520
Os.6554.1.S1_at--491--4391Chr09:13021648..13021672 (25 bp)
GCCAATCTGGGATAGTGACTAGCCT
LOC_Os09g21520
Os.6554.1.S1_at--18--6431Chr09:13021692..13021716 (25 bp)
GATCTTGTGAGAGCGGTCCGTCAAG
LOC_Os09g21520
Os.6554.1.S1_at--621--9271Chr09:13021708..13021732 (25 bp)
TCCGTCAAGCGGAGGAGTTGGCCCA
LOC_Os09g21520
Os.6554.1.S1_at--811--6611Chr09:13021724..13021748 (25 bp)
GTTGGCCCAGCCAGTAGTAAGCTTC
LOC_Os09g21520
Os.6554.1.S1_at--141--291Chr09:13021751..13021775 (25 bp)
ATAGTCATCATCCTTTCACTGATAA
LOC_Os09g21520
Os.6554.1.S1_at--1060--6811Chr09:13021961..13021985 (25 bp)
GTTTATTGAGTTCGACCCATTAGTC
LOC_Os09g21520
Os.6554.1.S1_at--437--10451Chr09:13021980..13022004 (25 bp)
TTAGTCTTAGTTTTCTCCCTTCTAT
LOC_Os09g21520
Target Sequence 
CACAGTTCTTTTTTGGTGTTATCTCATTGGATGTTTCCTTCTGTTACCTCTAGGCGGAGTTTGCTGCCTGTGCTGTTGAT
TTTTTGCATAGGGTGGGTCGCACAGCCAGAGCTGGCCAATCTGGGATAGTGACTAGCCTATACACAGAGGCAAATCGTGA
TCTTGTGAGAGCGGTCCGTCAAGCGGAGGAGTTGGCCCAGCCAGTAGTAAGCTTCATATAGTCATCATCCTTTCACTGAT
AACATCTTCCTAGAAACAATGAAACATGCTTACAGAAAGCTATCTATATGTTTGTTCAGGAGAAAGCATTCAGCAGAAAA
AGGAGCTTNCGCAACAAGTTGAAGAAGCAAGCATTACATAAATCTACAGCATTATTATCTTGATATTGTGATATTCTCTT
TTTCTATGAAGGACAAGTTAATATATAGTTTATTGAGTTCGACCCATTAGTCTTAGTTTTCTCCCTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis