Browse Element(s) Details


Os.10162.1.S1_at

Description gb:AK119688.1
DB_XREF= gi:37989311
TID=Os.10162.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-A09, full insert sequence.
FL= gb:AK120910.1 gb:AK119688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2879011/11expressed protein
LOC_Os08g058801/11U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28750OsAffx.23436.1.S1_at11/111+16431611..16433932hypothetical protein
LOC_Os01g28760OsAffx.4856.1.S1_x_at1/111+16435326..16438787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28770OsAffx.28887.2.S1_x_at2/111+16440198..16441465hypothetical protein
LOC_Os01g28780OsAffx.639.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28780OsAffx.2113.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28790Os.10162.1.S1_at11/111+16457381..16458225expressed protein
LOC_Os01g28790Os.46603.1.A1_x_at1/111+16457381..16458225expressed protein
LOC_Os01g28800OsAffx.23437.1.S1_at11/111+16461601..16462081retrotransposon, putative, centromere-specific
LOC_Os01g28810OsAffx.23438.1.S1_at9/111+16463090..16468000expressed protein
LOC_Os01g28820OsAffx.21110.1.S1_s_at11/111+16471696..16472100hypothetical protein
LOC_Os01g28830OsAffx.11248.1.S1_at11/111+16472672..16474341hypothetical protein
LOC_Os01g28830OsAffx.29962.1.S1_at1/111+16472672..16474341hypothetical protein
LOC_Os01g28840Os.33968.1.S1_at11/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g28840Os.5608.3.S1_x_at1/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006364biological_processrRNA processing
GO:0005730cellular_componentnucleolus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
GO:0015030cellular_componentCajal body
GO:0016363cellular_componentnuclear matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10162.1.S1_at--201--8031Chr01:16457815..16457839 (25 bp)
GGAGTAGTAGTAGGCTCCCGTCCGT
LOC_Os01g28790
Os.10162.1.S1_at--34--3772Chr01:16457844..16457868 (25 bp)
CTCTTGCTTATTGTTTTGTTCCCTT
LOC_Os01g28790
Os.10162.1.S1_at--1086--9311Chr01:16457863..16457887 (25 bp)
TCCCTTTCTGTTCTTGTGTTAGCAT
LOC_Os01g28790
Os.10162.1.S1_at--796--6911Chr01:16457895..16457919 (25 bp)
GTATGGTAGTTCTGACTAGCCTCGT
LOC_Os01g28790
Os.10162.1.S1_at--55--10591Chr01:16457904..16457928 (25 bp)
TTCTGACTAGCCTCGTGGTGAGTGG
LOC_Os01g28790
Os.10162.1.S1_at--107--6151Chr01:16457945..16457969 (25 bp)
GAGGTCACCGGCTCAGTTTTATTGT
LOC_Os01g28790
Os.10162.1.S1_at--652--9531Chr01:16457957..16457981 (25 bp)
TCAGTTTTATTGTGTGGCCGGAGAC
LOC_Os01g28790
Os.10162.1.S1_at--493--2831Chr01:16457982..16458006 (25 bp)
AAGTCAGACAGGTAACAGCGGCGGC
LOC_Os01g28790
Os.10162.1.S1_at--988--3711Chr01:16458039..16458063 (25 bp)
CTAGCGCAGCGGTATGTGGCGACCA
LOC_Os01g28790
Os.10162.1.S1_at--76--9931Chr01:16458122..16458146 (25 bp)
TACGCGTATACGGTAGGGATCCCTT
LOC_Os01g28790
Os.10162.1.S1_at--3--7671Chr01:16458137..16458161 (25 bp)
GGGATCCCTTTGGTATGTACAATAC
LOC_Os01g28790
Target Sequence 
GGAGTAGTAGTAGGCTCCCGTCCGTGCTTCTCTTGCTTATTGTTTTGTTCCCTTTCTGTTCTTGTGTTAGCATATGAGCT
GTATGGTAGTTCTGACTAGCCTCGTGGTGAGTGGCGCGGCCGCGCGCGTTGAGGTCACCGGCTCAGTTTTATTGTGTGGC
CGGAGACAAGTCAGACAGGTAACAGCGGCGGCCGTGAGCTCGGACGACGGCGGTGTAGAATGAGCTAGCGCAGCGGTATG
TGGCGACCAGATGTAATTACATAGTATTTTACATTTTACATGGTAGACATATACAGTACGAGTATATTACGCGTATACGG
TAGGGATCCCTTTGGTATGTACAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis