Browse Element(s) Details


OsAffx.28887.2.S1_x_at

Description gb:NM_193043.1
DB_XREF= gi:34913169
GEN=OJ1339_F05.39
TID=OsAffx.28887.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1339_F05.39), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4341011/11hypothetical protein
LOC_Os01g287702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43364Os.52361.1.S1_at10/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.2.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.1.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43370Os.35708.1.S1_at11/117+25964405..25965949Oxidoreductase, putative, expressed
LOC_Os07g43380Os.7999.1.S1_at11/117+25975415..25978294zinc finger family protein, putative, expressed
LOC_Os07g43390Os.18573.1.S1_at11/117+25978928..259831604-alpha-glucanotransferase, chloroplast precursor, putative, expressed
LOC_Os07g43400Os.41130.1.S1_at10/117+25984351..25985704SWIM zinc finger family protein, expressed
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein
LOC_Os07g43420Os.24983.1.S1_at10/117+25997090..26001678Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g43430Os.41128.1.S1_at11/117+26003330..26005801expressed protein
LOC_Os07g43440OsAffx.16695.1.S1_s_at11/117+26007223..26008636expressed protein
LOC_Os07g43450OsAffx.28888.1.S1_x_at7/117+26011303..26011794hypothetical protein
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28887.2.S1_x_at--684--5751Chr07:25989130..25989154 (25 bp)
GACGGTGCCGTCTTCAAGCGGACCT
LOC_Os07g43410
OsAffx.28887.2.S1_x_at--636--2052Chr07:25989159..25989183 (25 bp)
ACTTCTTGATCCGACGGCGATGGCG
LOC_Os07g43410
OsAffx.28887.2.S1_x_at--230--6051Chr07:25989183..25989207 (25 bp)
GAGTTGGCGACTGCCTACACGGAAG
LOC_Os07g43410
OsAffx.28887.2.S1_x_at--663--2151Chr07:25989199..25989223 (25 bp)
ACACGGAAGGGCGTACTGCCCGTGA
LOC_Os07g43410
OsAffx.28887.2.S1_x_at--532--9951Chr07:25989235..25989259 (25 bp)
TACCTTGGCTTTTATCCGATTCGCG
LOC_Os07g43410
OsAffx.28887.2.S1_x_at--420--4812Chr07:25989267..25989291 (25 bp)
GCTCGGACGAGCAATTCTCATCAGT
LOC_Os07g43410
OsAffx.28887.2.S1_x_at--17--8292Chr07:25989734..25989758 (25 bp)
GGCATTTGAGAGTGCGCCATTAAAG
LOC_Os07g43410
OsAffx.28887.2.S1_x_at--429--2251Chr07:25989767..25989791 (25 bp)
AAATAGTTCAAAATCCCCGAGCAGG
LOC_Os07g43410
OsAffx.28887.2.S1_x_at--850--4471Chr07:25990026..25990292 (25 bp)
GCCGGCGAGGTTTCTTTCAGCCTTT
LOC_Os07g43410
OsAffx.28887.2.S1_x_at--401--1692Chr07:25990286..25990310 (25 bp)
AGCCTTTTGGTTCTGTTCATTCATT
LOC_Os07g43410
OsAffx.28887.2.S1_x_at--346--9571Chr07:25990310..25990334 (25 bp)
TCATTCAGTTGGGTTCCTGGTCCTG
LOC_Os07g43410
Target Sequence 
GACGGTGCCGTCTTCAAGCGGACCTCGCCACTTCTTGATCCGACGGCGATGGCGAGTTGGCGACTGCCTACACGGAAGGG
CGTACTGCCCGTGACCGGTGACCGCTACCTTGGCTTTTATCCGATTCGCGGGCAACCGCTCGGACGAGCAATTCTCATCA
GTTATCAGAAGATGGCATTTGAGAGTGCGCCATTAAAGAAGATGGCAAATAGTTCAAAATCCCCGAGCAGGGAGGCCATG
GTGGTGTTCGACGAGTCCAGGGACATGGAGCGATGCGGCAGCAGGTCCGCCGAGCTGGTCGCCTTCCACCTCGGCCTCTA
CGATTCGGGGCTCTTCCCCTTGGTCGCGGACGGCGCCGGCGGCCATGGCGTGGTGACGCGGGACCTCCTCCCGCTGTTCT
GCCTCTCGCCGGACTTCCTTGGCCGCGTCGCCCTTCTCAGGGGACCCGGCATCGCCGAGCTCGACGCCGGCGAGGTTTCT
TTCAGCCTTTTGGTTCTGTTCATTCATTCATTCAGTTGGGTTCCTGGTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28887.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis