Browse Element(s) Details


OsAffx.28888.1.S1_x_at

Description gb:NM_193048.1
DB_XREF= gi:34913179
TID=OsAffx.28888.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0506F02.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g434507/11hypothetical protein
LOC_Os11g191491/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein
LOC_Os07g43420Os.24983.1.S1_at10/117+25997090..26001678Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g43430Os.41128.1.S1_at11/117+26003330..26005801expressed protein
LOC_Os07g43440OsAffx.16695.1.S1_s_at11/117+26007223..26008636expressed protein
LOC_Os07g43450OsAffx.28888.1.S1_x_at7/117+26011303..26011794hypothetical protein
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43470Os.10918.1.S1_at11/117+26017901..26023060Developmentally regulated GTP-binding protein 1, putative, expressed
LOC_Os07g43480OsAffx.28887.1.S1_at11/117+26024482..26026565hypothetical protein
LOC_Os07g43490OsAffx.9077.1.S1_s_at11/117+26028836..26029606hypothetical protein
LOC_Os07g43500NANA7+26031490..26033546hypothetical protein
LOC_Os07g43510Os.41122.1.S1_at5/117+26034746..2603524640S ribosomal protein S9, putative
LOC_Os07g43519Os.41122.1.S1_at2/117+26036782..26037535NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28888.1.S1_x_at--156--2751Chr07:26011209..26011233 (25 bp)
AAGAAAAGAAGCACACACCCGCCCA
NONE
OsAffx.28888.1.S1_x_at--829--1691Chr07:26011247..26011271 (25 bp)
ACCACAAAGCAATCGCTTCGCTCCT
NONE
OsAffx.28888.1.S1_x_at--221--5151Chr07:26011275..26011299 (25 bp)
GCAAGCCACGAAACCCGGCGAATCG
NONE
OsAffx.28888.1.S1_x_at--812--5531Chr07:26011284..26011308 (25 bp)
GAAACCCGGCGAATCGGCGATGCCC
NONE
OsAffx.28888.1.S1_x_at--1159--8451Chr07:26011443..26011467 (25 bp)
TGGCGGAGGGTACCGGCGCCTCGAC
LOC_Os07g43450
OsAffx.28888.1.S1_x_at--413--1331Chr07:26011523..26011547 (25 bp)
AGAGGAGCGTGTTCCACGTCGACCA
LOC_Os07g43450
OsAffx.28888.1.S1_x_at--50--5772Chr07:26011633..26011657 (25 bp)
GACGTGCTGCTGTTCGAGCACCTGC
LOC_Os07g43450
OsAffx.28888.1.S1_x_at--812--3833Chr11:10903562..10903586 (25 bp)
CTGCTGTTCGAGCACCTGCTGTGGC
LOC_Os11g19149
OsAffx.28888.1.S1_x_at--622--1411Chr07:26011677..26011701 (25 bp)
AGACAAGGGGATGCTGGGCTACGAC
LOC_Os07g43450
OsAffx.28888.1.S1_x_at--746--1752Chr07:26011724..26011748 (25 bp)
ACCTGTCGGAGATCGTCGACTTCTA
LOC_Os07g43450
OsAffx.28888.1.S1_x_at--361--9371Chr07:26011739..26011763 (25 bp)
TCGACTTCTACTCGCAGGACGACGA
LOC_Os07g43450
Target Sequence 
AAGAAAAGAAGCACACACCCGCCCACACAAACACCACCACCACAAAGCAATCGCTTCGCTCCTCCCGCAAGCCACGAAAC
CCGGCGAATCGGCGATGCCCCACCACCACCACCGCCGCCACGGCCACGCCGCCGCGGCCGCCGAGGCCGAGGAGGAGGCC
CCGTCGCCGCGTCCGTCCTCCGCCGGCTGCTACACCTTCCTCCGCTCTGCGTCCCGCCGCGGCGGCGCCGGCGGTGGCGG
AGGGTACCGGCGCCTCGACTCCTCCTCCGCGGCGGGGGATGTGATTAGGGTGGAGGTGGGGACGACGAAGGGGGAGAGGA
GCGTGTTCCACGTCGACCAGGCCGTGCTCGAGGCCGGGCCGGTGCGGCGCCTCCTCGCGGCGGCCGGGCGGCGGACCCGC
GGCGGCGCGGTGGCGGTCGCCGTGGACGTGCTGCTGTTCGAGCACCTGCTGTGGCTGCAGGCGGCCGGAGACAAGGGGAT
GCTGGGCTACGACGACGACGAATCAGCCGCCGCCGACCTGTCGGAGATCGTCGACTTCTACTCGCAGGACGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28888.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis