Browse Element(s) Details


Os.29063.2.S1_at

Description gb:AK070893.1
DB_XREF= gi:32980916
TID=Os.29063.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.29063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to acid phosphatase (P0506F02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072H19, full insert sequence.
FL= gb:AK070893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4346011/11Protein SUR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein
LOC_Os07g43420Os.24983.1.S1_at10/117+25997090..26001678Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g43430Os.41128.1.S1_at11/117+26003330..26005801expressed protein
LOC_Os07g43440OsAffx.16695.1.S1_s_at11/117+26007223..26008636expressed protein
LOC_Os07g43450OsAffx.28888.1.S1_x_at7/117+26011303..26011794hypothetical protein
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43470Os.10918.1.S1_at11/117+26017901..26023060Developmentally regulated GTP-binding protein 1, putative, expressed
LOC_Os07g43480OsAffx.28887.1.S1_at11/117+26024482..26026565hypothetical protein
LOC_Os07g43490OsAffx.9077.1.S1_s_at11/117+26028836..26029606hypothetical protein
LOC_Os07g43500NANA7+26031490..26033546hypothetical protein
LOC_Os07g43510Os.41122.1.S1_at5/117+26034746..2603524640S ribosomal protein S9, putative
LOC_Os07g43519Os.41122.1.S1_at2/117+26036782..26037535NA
LOC_Os07g43530Os.34549.1.S1_at10/117+26037984..26040531Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0016020cellular_componentmembrane
GO:0000254molecular_functionC-4 methylsterol oxidase activity
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29063.2.S1_at--800--2771Chr07:26013661..26013685 (25 bp)
AAGACCACTGCGAGACTAGCTTGAA
LOC_Os07g43460
Os.29063.2.S1_at--1016--7371Chr07:26013604..26013628 (25 bp)
GTGAGATACAATGCTCTACCTCCCT
LOC_Os07g43460
Os.29063.2.S1_at--796--3711Chr07:26013589..26013613 (25 bp)
CTACCTCCCTTTCATATGTTTAGAA
LOC_Os07g43460
Os.29063.2.S1_at--411--5432Chr08:21898923..21898942 (20 bp)
GAACCTCATAGGGACCAATCTAACT
NONE
Os.29063.2.S1_at--1016--10351Chr07:26013503..26013527 (25 bp)
TTTTTCGCGTCTTGCTGGAAGCAAT
LOC_Os07g43460
Os.29063.2.S1_at--684--5371Chr07:26013460..26013484 (25 bp)
GAAGACACTGAAGCTCTTGCGCGAT
LOC_Os07g43460
Os.29063.2.S1_at--848--9571Chr07:26013446..26013470 (25 bp)
TCTTGCGCGATGCTTGTTCTTACAC
LOC_Os07g43460
Os.29063.2.S1_at--702--6731Chr07:26013431..26013455 (25 bp)
GTTCTTACACCTGCTGTTAATCTAG
LOC_Os07g43460
Os.29063.2.S1_at--77--3051Chr07:26013413..26013437 (25 bp)
AATCTAGTTAGATCGGTCACCTGGA
LOC_Os07g43460
Os.29063.2.S1_at--877--5891Chr07:26013323..26013347 (25 bp)
GAGCTGGCATTTACATTGCTGTGCA
LOC_Os07g43460
Os.29063.2.S1_at--854--8211Chr07:26013286..26013310 (25 bp)
GGAATCACACTTCTGTATGTACCCC
LOC_Os07g43460
Target Sequence 
AAGACCACTGCGAGACTAGCTTGAACCGATGGAAGTGTATAGAACTCCAGCAACTCAGTGAGATACAATGCTCTACCTCC
CTTTCATATGTTTAGAACCTCATAGGGACCAATCTAACTTCGAAGATGTTGAAGCTGTTCAAGTACTCCCAGATTTTNTT
TTTCGCGTCTTGCTGGAAGCAATACGCTAGTCNGGATTTGGGAAGACACTGAAGCTCTTGCGCGATGCTTGTTCTTACAC
CTGCTGTTAATCTAGTTAGATCGGTCACCTGGAATGTGTGTGGTACTGTATGGTTTGTCTTGATGGCTTTTCTCCTTGTC
ATGGCTATTTTTTGTGCAGAGCTGGCATTTACATTGCTGTGCAGATAGTGTATTTGGAATCACACTTCTGTATGTACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29063.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis