Browse Element(s) Details


OsAffx.16695.1.S1_s_at

Description gb:NM_193047.1
DB_XREF= gi:34913177
TID=OsAffx.16695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0506F02.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4344011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43390Os.18573.1.S1_at11/117+25978928..259831604-alpha-glucanotransferase, chloroplast precursor, putative, expressed
LOC_Os07g43400Os.41130.1.S1_at10/117+25984351..25985704SWIM zinc finger family protein, expressed
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein
LOC_Os07g43420Os.24983.1.S1_at10/117+25997090..26001678Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g43430Os.41128.1.S1_at11/117+26003330..26005801expressed protein
LOC_Os07g43440OsAffx.16695.1.S1_s_at11/117+26007223..26008636expressed protein
LOC_Os07g43450OsAffx.28888.1.S1_x_at7/117+26011303..26011794hypothetical protein
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43470Os.10918.1.S1_at11/117+26017901..26023060Developmentally regulated GTP-binding protein 1, putative, expressed
LOC_Os07g43480OsAffx.28887.1.S1_at11/117+26024482..26026565hypothetical protein
LOC_Os07g43490OsAffx.9077.1.S1_s_at11/117+26028836..26029606hypothetical protein
LOC_Os07g43500NANA7+26031490..26033546hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16695.1.S1_s_at--463--1631Chr07:26008555..26008579 (25 bp)
AGCGGCACGGCCAACACCGTCGTGG
LOC_Os07g43440
OsAffx.16695.1.S1_s_at--547--4651Chr07:26008507..26008531 (25 bp)
GCGTCGGCCGTCGTGTTCTTGCTGT
LOC_Os07g43440
OsAffx.16695.1.S1_s_at--22--4511Chr07:26008501..26008525 (25 bp)
GCCGTCGTGTTCTTGCTGTCGCCGC
LOC_Os07g43440
OsAffx.16695.1.S1_s_at--874--8451Chr07:26008410..26008434 (25 bp)
TGGCCATCGGGCTCGCCGGACACGA
LOC_Os07g43440
OsAffx.16695.1.S1_s_at--351--8331Chr07:26008401..26008425 (25 bp)
GGCTCGCCGGACACGAGAGCTGGCT
LOC_Os07g43440
OsAffx.16695.1.S1_s_at--497--4271Chr07:26008362..26008386 (25 bp)
CCTGGGCGAAGCTGGCCTGCCTGAA
LOC_Os07g43440
OsAffx.16695.1.S1_s_at--962--2671Chr07:26008354..26008378 (25 bp)
AAGCTGGCCTGCCTGAAGCTCCGGC
LOC_Os07g43440
OsAffx.16695.1.S1_s_at--850--6991Chr07:26007703..26007727 (25 bp)
GTACGATCTGCGCAGCCCGGCGGCG
LOC_Os07g43440
OsAffx.16695.1.S1_s_at--355--7611Chr07:26007585..26007609 (25 bp)
GGGAAGACCACGGTGAAGCTCAAGA
LOC_Os07g43440
OsAffx.16695.1.S1_s_at--692--2771Chr07:26007582..26007606 (25 bp)
AAGACCACGGTGAAGCTCAAGAGGA
LOC_Os07g43440
OsAffx.16695.1.S1_s_at--88--4351Chr07:26007578..26007602 (25 bp)
CCACGGTGAAGCTCAAGAGGAAGTT
LOC_Os07g43440
Target Sequence 
AGCGGCACGGCCAACACCGTCGTGGCGCTCGTGCTCCTCCTCGTCGCCGCGTCGGCCGTCGTGTTCTTGCTGTCGCCGCC
GACGCCGGCGGCGACGCGGATCGGCCGTCACGGCGACGGCGGCCCCCGCCGCGAGCCGGTGGAGCTGGCCATCGGGCTCG
CCGGACACGAGAGCTGGCTCGACGCCGTCCGCGCCTGGGCGAAGCTGGCCTGCCTGAAGCTCCGGCCGCCGGAGCCGCGG
TACGATCTGCGCAGCCCGGCGGCGGTGAAGGCGGCGGCGAAGGAGGCCCTGGAGATGGGCAAGGTGGCGGTGGAGCACGC
CGCAGAGTCGGCGGCGACGGCGGCGGAGGAGGCAGTGGGGAAGACCACGGTGAAGCTCAAGAGGAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16695.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis