Browse Element(s) Details


Os.24983.1.S1_at

Description gb:AK063426.1
DB_XREF= gi:32973444
TID=Os.24983.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to transcription factor MYB124 (P0506F02.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D02, full insert sequence.
FL= gb:AK063426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4342010/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43380Os.7999.1.S1_at11/117+25975415..25978294zinc finger family protein, putative, expressed
LOC_Os07g43390Os.18573.1.S1_at11/117+25978928..259831604-alpha-glucanotransferase, chloroplast precursor, putative, expressed
LOC_Os07g43400Os.41130.1.S1_at10/117+25984351..25985704SWIM zinc finger family protein, expressed
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein
LOC_Os07g43420Os.24983.1.S1_at10/117+25997090..26001678Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g43430Os.41128.1.S1_at11/117+26003330..26005801expressed protein
LOC_Os07g43440OsAffx.16695.1.S1_s_at11/117+26007223..26008636expressed protein
LOC_Os07g43450OsAffx.28888.1.S1_x_at7/117+26011303..26011794hypothetical protein
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43470Os.10918.1.S1_at11/117+26017901..26023060Developmentally regulated GTP-binding protein 1, putative, expressed
LOC_Os07g43480OsAffx.28887.1.S1_at11/117+26024482..26026565hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0010052biological_processguard cell differentiation
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24983.1.S1_at--792--2511Chr07:26000982..26001006 (25 bp)
AACATTCCTGCCGTACGCAGATGAC
LOC_Os07g43420
Os.24983.1.S1_at--29--6311Chr07:26001001..26001025 (25 bp)
GATGACATGCCGACTCCAAAATTTA
LOC_Os07g43420
Os.24983.1.S1_at--538--10711Chr07:26001161..26001185 (25 bp)
TTGCTGTCTGTGCTTGAGTTGACCT
LOC_Os07g43420
Os.24983.1.S1_at--1159--7691Chr07:26001191..26001215 (25 bp)
GGGTCGAGGCCAGACACTTCTCAGC
LOC_Os07g43420
Os.24983.1.S1_at--28--2891Chr07:26001229..26001253 (25 bp)
AAGGGCTCTCCTTAATAGCCTATGA
LOC_Os07g43420
Os.24983.1.S1_at--443--3591Chr07:26001288..26001312 (25 bp)
CATTATTGGTGTGCCTGGGATCTAA
LOC_Os07g43420
Os.24983.1.S1_at--158--7671Chr07:26001304..26001328 (25 bp)
GGGATCTAAACCCAAGCCTGCCATG
LOC_Os07g43420
Os.24983.1.S1_at--649--1531Chr07:26001340..26001364 (25 bp)
AGCATGCCTACTATTCAGCGTGTGT
LOC_Os07g43420
Os.24983.1.S1_at--1034--7891Chr07:26001370..26001394 (25 bp)
GGTTCTTTGACATACTCCTATTTGC
LOC_Os07g43420
Os.24983.1.S1_at--1129--4931NONE
GCATTGGCGGTGTTGTAGTATCATC
NONE
Os.24983.1.S1_at--605--7411Chr07:26001653..26001677 (25 bp)
GTGATTTAACAGTTTCCTTCTGACT
LOC_Os07g43420
Target Sequence 
AACATTCCTGCCGTACGCAGATGACATGCCGACTCCAAAATTTACTGCTAGTGAGAGGAATTTTTTGCTGTCTGTGCTTG
AGTTGACCTCGCCAGGGTCGAGGCCAGACACTTCTCAGCAGCCTTCTTGCAAAAGGGCTCTCCTTAATAGCCTATGAAAC
TGTTATAAGTATATTTCAGTTTTTTTTCCTGCATTATTGGTGTGCCTGGGATCTAAACCCAAGCCTGCCATGCATGCCCC
CTCAGCATGCCTACTATTCAGCGTGTGTTAGGAGGTTCTTTGACATACTCCTATTTGCATCAAGTTTGGATATCTCATAT
CCAAGTTTAGCTGTTTGTATATGAGATCTCAATTGTTTTAAGAGTCTCATAGTTTGTTTGGTTGTACATATTGCATTGGC
GGTGTTGTAGTATCATCATACAGGAATTAAAAGGGGCGATGGTGTACCAAAGAGTTTACAGCTTGTATCCAAAATATAGA
ATAAGTACTATTCTTTGTGTAATTAACTCTTGTAACCNTTCTATGTTGTACGGAATATATTGGTTTGGTGTGTAGTGTGA
TTTAACAGTTTCCTTCTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis