Browse Element(s) Details


Os.18573.1.S1_at

Description gb:AU030760
DB_XREF= gi:3766650
DB_XREF=AU030760
CLONE=E60202_2Z
TID=Os.18573.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 4-alpha-glucanotransferase (OJ1339_F05.35), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4339011/114-alpha-glucanotransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43360Os.9844.1.A1_at11/117+25957146..25961948histone acetyltransferase MYST1, putative, expressed
LOC_Os07g43364Os.52361.1.S1_at10/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.2.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.1.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43370Os.35708.1.S1_at11/117+25964405..25965949Oxidoreductase, putative, expressed
LOC_Os07g43380Os.7999.1.S1_at11/117+25975415..25978294zinc finger family protein, putative, expressed
LOC_Os07g43390Os.18573.1.S1_at11/117+25978928..259831604-alpha-glucanotransferase, chloroplast precursor, putative, expressed
LOC_Os07g43400Os.41130.1.S1_at10/117+25984351..25985704SWIM zinc finger family protein, expressed
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein
LOC_Os07g43420Os.24983.1.S1_at10/117+25997090..26001678Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g43430Os.41128.1.S1_at11/117+26003330..26005801expressed protein
LOC_Os07g43440OsAffx.16695.1.S1_s_at11/117+26007223..26008636expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000023biological_processmaltose metabolism
GO:0005976biological_processpolysaccharide metabolism
GO:0005983biological_processstarch catabolism
GO:0005829cellular_componentcytosol
GO:0004134molecular_function4-alpha-glucanotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18573.1.S1_at--165--3671Chr07:25982341..25982365 (25 bp)
CTTTTGGCGGTGGTTCTGACAATCC
LOC_Os07g43390
Os.18573.1.S1_at--1100--2131Chr07:25982366..25982390 (25 bp)
ACACTTGCCCCATAACCATGAATTT
LOC_Os07g43390
Os.18573.1.S1_at--703--5731Chr07:25982666..25982686 (21 bp)
GACTGTGTTCAAGTATCTGCCTGAG
LOC_Os07g43390
Os.18573.1.S1_at--579--471Chr07:25982676..25982700 (25 bp)
ATCTGCCTGAGGCTAATAGGACTGA
LOC_Os07g43390
Os.18573.1.S1_at--309--9171Chr07:25982725..25982749 (25 bp)
TGCCCTCTCTTCAGTTGCAAGGACA
LOC_Os07g43390
Os.18573.1.S1_at--315--651Chr07:25982762..25982786 (25 bp)
ATGCAGGACATTCTTGGCCTCGACA
LOC_Os07g43390
Os.18573.1.S1_at--947--8451Chr07:25982776..25982800 (25 bp)
TGGCCTCGACAGTTCTGCTAGAATG
LOC_Os07g43390
Os.18573.1.S1_at--125--7991Chr07:25982927..25982951 (25 bp)
GGATGCCGAGCTCTGTCAGCTTCGA
LOC_Os07g43390
Os.18573.1.S1_at--311--8531Chr07:25982991..25983015 (25 bp)
TGGACTGTACAACCGGCTCTAAATA
LOC_Os07g43390
Os.18573.1.S1_at--217--2251Chr07:25983011..25983035 (25 bp)
AAATATATTTCAGCGCTCGTTTTCT
LOC_Os07g43390
Os.18573.1.S1_at--126--4811Chr07:25983025..25983049 (25 bp)
GCTCGTTTTCTGTCGCTTGAACTTA
LOC_Os07g43390
Target Sequence 
CTTTTGGCGGTGGTTCTGACAATCCACACTTGCCCCATAACCATGAATTTGATCAAGTNGTATACACCGGNACACACGAC
AATGACACGGTTATTGGTTGGTGGCAAACTTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAA
TAGGACTGAAATCTCATGGGCNCTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCATGGTAACCATGCAGGACA
TTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCNGCTACACAGAAAGGGNACTGGNGATGGNGGATGCCGAGCTCT
GTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACAACCGGCTCTAAATATATTT
CAGCGCTCGTTTTCTGTCGCTTGAACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis