Browse Element(s) Details


Os.55387.1.S1_at

Description gb:AK107990.1
DB_XREF= gi:32993199
TID=Os.55387.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-F07, full insert sequence.
FL= gb:AK107990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g434101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43364Os.52361.1.S1_at10/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.2.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.1.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43370Os.35708.1.S1_at11/117+25964405..25965949Oxidoreductase, putative, expressed
LOC_Os07g43380Os.7999.1.S1_at11/117+25975415..25978294zinc finger family protein, putative, expressed
LOC_Os07g43390Os.18573.1.S1_at11/117+25978928..259831604-alpha-glucanotransferase, chloroplast precursor, putative, expressed
LOC_Os07g43400Os.41130.1.S1_at10/117+25984351..25985704SWIM zinc finger family protein, expressed
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein
LOC_Os07g43420Os.24983.1.S1_at10/117+25997090..26001678Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g43430Os.41128.1.S1_at11/117+26003330..26005801expressed protein
LOC_Os07g43440OsAffx.16695.1.S1_s_at11/117+26007223..26008636expressed protein
LOC_Os07g43450OsAffx.28888.1.S1_x_at7/117+26011303..26011794hypothetical protein
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55387.1.S1_at--762--3331Chr07:25258669..25258693 (25 bp)
CACTGCGGTGTTTTCATGGCGCTAA
NONE
Os.55387.1.S1_at--749--8431Chr07:25258860..25258884 (25 bp)
GGCCACCTCGCCTACATAAGGTGAA
NONE
Os.55387.1.S1_at--103--1611Chr07:25258890..25258914 (25 bp)
AGCTGCGTCCTGAAACGTCAGTGAT
NONE
Os.55387.1.S1_at--1085--1891Chr07:25258904..25258928 (25 bp)
ACGTCAGTGATCTGATCTTCTTCTC
NONE
Os.55387.1.S1_at--534--9511Chr07:25258938..25258962 (25 bp)
TCTCTGCCATCGAGGGAGGTGTGCT
NONE
Os.55387.1.S1_at--932--6132Chr07:25258953..25258977 (25 bp)
GAGGTGTGCTTTGTACTAGCTTTTT
NONE
Os.55387.1.S1_at--441--7551Chr07:25259028..25259052 (25 bp)
GGGCCAATGATACTTTGTGCTAGCT
NONE
Os.55387.1.S1_at--775--8691Chr07:25259043..25259067 (25 bp)
TGTGCTAGCTAGGTGCTCGACAAAA
NONE
Os.55387.1.S1_at--120--3031Chr07:25259066..25259090 (25 bp)
AATGCGTCCTTGATTGATGCTTGGT
NONE
Os.55387.1.S1_at--894--3311Chr07:25259097..25259121 (25 bp)
CACTAGATCTGTTCATACGACTTGT
NONE
Os.55387.1.S1_at--745--6711Chr07:25259167..25259191 (25 bp)
GTTCTTCAGTTCTTGTACTTAGTAC
NONE
Target Sequence 
CACTGCGGTGTTTTCATGGCGCTAAGGTGGCGGCGGTGGCGGCGGCGGGTGATGGCGGAGTCGCCGGCCGTGCGGCTGTT
CCGGCGAAGGGCGGCGGCGGCGGCGTTGCGCGGGGGGTGAAGGTGGTGGTAAGAGGGCTCGTCGGCAAGGCCGGCAAGGT
GTTCGGCCGGTCGATCCCGGCGGCAAGGTTCGGCCACCTCGCCTACATAAGGTGAAGGCGCAGCTGCGTCCTGAAACGTC
AGTGATCTGATCTTCTTCTCCTCTCTCACTCTCTGCCATCGAGGGAGGTGTGCTTTGTACTAGCTTTTTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTGTTTTTGGGCCAATGATACTTTGTGCTAGCTAGGTGCTCGACAAAAT
GCGTCCTTGATTGATGCTTGGTGATTTTCACTAGATCTGTTCATACGACTTGTAAATAGTAGAACATGCTAGGTACAAGG
TACTTTTCAGATTACACTGTTCTTCAGTTCTTGTACTTAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis