Browse Element(s) Details


Os.35708.1.S1_at

Description gb:AK066185.1
DB_XREF= gi:32976203
TID=Os.35708.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to oxidoreductase (OJ1339_F05.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056F23, full insert sequence.
FL= gb:AK066185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4337011/11Oxidoreductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43330Os.21364.2.S1_x_at11/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43330Os.21364.1.S1_at8/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43340OsAffx.5622.1.S1_at11/117+25942601..25942986hypothetical protein
LOC_Os07g43350Os.32679.1.S1_at11/117+25944257..25948867Leucine Rich Repeat family protein, expressed
LOC_Os07g43360Os.9844.1.A1_at11/117+25957146..25961948histone acetyltransferase MYST1, putative, expressed
LOC_Os07g43364Os.52361.1.S1_at10/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.2.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.1.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43370Os.35708.1.S1_at11/117+25964405..25965949Oxidoreductase, putative, expressed
LOC_Os07g43380Os.7999.1.S1_at11/117+25975415..25978294zinc finger family protein, putative, expressed
LOC_Os07g43390Os.18573.1.S1_at11/117+25978928..259831604-alpha-glucanotransferase, chloroplast precursor, putative, expressed
LOC_Os07g43400Os.41130.1.S1_at10/117+25984351..25985704SWIM zinc finger family protein, expressed
LOC_Os07g43410OsAffx.28887.2.S1_x_at11/117+25987800..25991570hypothetical protein
LOC_Os07g43410OsAffx.28887.3.S1_at7/117+25987800..25991570hypothetical protein
LOC_Os07g43410Os.55387.1.S1_at1/117+25987800..25991570hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35708.1.S1_at--640--1611Chr07:25964545..25964569 (25 bp)
AGCGGCCGAAGCTCTGGCTAAGGAC
LOC_Os07g43370
Os.35708.1.S1_at--660--7671Chr07:25964518..25964542 (25 bp)
GGGATTATCCTTAGCCTGATTTGAG
LOC_Os07g43370
Os.35708.1.S1_at--640--4271Chr07:25964504..25964528 (25 bp)
CCTGATTTGAGCTGAGTGGGCCATA
LOC_Os07g43370
Os.35708.1.S1_at--359--4311Chr07:25964484..25964508 (25 bp)
CCATATGGGCCTTGTTTATTTTAGG
LOC_Os07g43370
Os.35708.1.S1_at--445--4431Chr07:25964476..25964500 (25 bp)
GCCTTGTTTATTTTAGGCCTTCCAT
LOC_Os07g43370
Os.35708.1.S1_at--720--171Chr07:25964467..25964491 (25 bp)
ATTTTAGGCCTTCCATTTGTAAATG
LOC_Os07g43370
Os.35708.1.S1_at--269--10812Chr11:17382053..17382427 (25 bp)
TTGTAAATGGTTGGAATAAGTTCAC
NONE
Os.35708.1.S1_at--717--3311Chr07:25964429..25964453 (25 bp)
CACTTTGGGTTCCTGTATTTGTCGC
LOC_Os07g43370
Os.35708.1.S1_at--987--8631Chr07:25964424..25964448 (25 bp)
TGGGTTCCTGTATTTGTCGCCAGTC
LOC_Os07g43370
Os.35708.1.S1_at--50--10671Chr07:25964420..25964444 (25 bp)
TTCCTGTATTTGTCGCCAGTCTGAT
LOC_Os07g43370
Os.35708.1.S1_at--1054--4411Chr07:25964406..25964430 (25 bp)
GCCAGTCTGATTTTCGCCCATTGAT
LOC_Os07g43370
Target Sequence 
AGCGGCCGAAGCTCTGGCTAAGGACAGGGGATTATCCTTAGCCTGATTTGAGCTGAGTGGGCCATATGGGCCTTGTTTAT
TTTAGGCCTTCCATTTGTAAATGGTTGGAATAAGTTCACTTTGGGTTCCTGTATTTGTCGCCAGTCTGATTTTCGCCCAT
TGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis