Browse Element(s) Details


Os.21364.2.S1_x_at

Description gb:BQ908837
DB_XREF= gi:22307615
DB_XREF=T016A02
CLONE=T016A02
TID=Os.21364.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome1, At1g77930 (OJ1339_F05.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4333011/11DNAJ heat shock N-terminal domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein
LOC_Os07g43290Os.9342.1.S1_at11/117+25918985..25921176Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g43300OsAffx.28886.1.S1_at10/117+25925395..25927053hypothetical protein
LOC_Os07g43310Os.37786.1.S1_at11/117+25928589..25929668Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os07g43316Os.36427.2.S1_x_at11/117+25931353..25934831expressed protein
LOC_Os07g43316Os.36427.2.S1_at11/117+25931353..25934831expressed protein
LOC_Os07g43322Os.32430.1.S1_at11/117+25935223..25938682expressed protein
LOC_Os07g43322OsAffx.16693.1.S1_x_at11/117+25935223..25938682expressed protein
LOC_Os07g43330Os.21364.2.S1_x_at11/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43330Os.21364.1.S1_at8/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43340OsAffx.5622.1.S1_at11/117+25942601..25942986hypothetical protein
LOC_Os07g43350Os.32679.1.S1_at11/117+25944257..25948867Leucine Rich Repeat family protein, expressed
LOC_Os07g43360Os.9844.1.A1_at11/117+25957146..25961948histone acetyltransferase MYST1, putative, expressed
LOC_Os07g43364Os.52361.1.S1_at10/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.2.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.1.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43370Os.35708.1.S1_at11/117+25964405..25965949Oxidoreductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21364.2.S1_x_at--762--6431Chr07:25940929..25940953 (25 bp)
GATCAGTAGACTTCTAGCTCTTGAG
LOC_Os07g43330
Os.21364.2.S1_x_at--1081--7851Chr07:25941059..25941083 (25 bp)
GGTTTCGCCAAAGTTCCATTTAGTG
LOC_Os07g43330
Os.21364.2.S1_x_at--1066--6611Chr07:25941138..25941162 (25 bp)
GTTGGAAATCCAGAATTCTCCCATG
LOC_Os07g43330
Os.21364.2.S1_x_at--633--1291Chr07:25941171..25941195 (25 bp)
AGATGTGGCCAACGGCGAAATCCAT
LOC_Os07g43330
Os.21364.2.S1_x_at--759--4271Chr07:25941214..25941238 (25 bp)
CCTGCAGCCCAGTGATTCAATCAAA
LOC_Os07g43330
Os.21364.2.S1_x_at--572--2331Chr07:25941236..25941260 (25 bp)
AAAGTTCTTTATGCAGATCCTCTAT
LOC_Os07g43330
Os.21364.2.S1_x_at--565--6371Chr07:25941251..25941275 (25 bp)
GATCCTCTATTCATTGTTTCCAGCA
LOC_Os07g43330
Os.21364.2.S1_x_at--130--6851Chr07:25941266..25941290 (25 bp)
GTTTCCAGCAGATGGACTGTATTGC
LOC_Os07g43330
Os.21364.2.S1_x_at--200--7051Chr07:25941358..25941382 (25 bp)
GTAACCTTCTTGTTTGTCCGAGCAA
LOC_Os07g43330
Os.21364.2.S1_x_at--519--7331Chr07:25941389..25941413 (25 bp)
GTGCATTCTCTGTGTGGTGCCTCTA
LOC_Os07g43330
Os.21364.2.S1_x_at--97--4471Chr07:25941407..25941431 (25 bp)
GCCTCTAGCTCTGACACTTTGTAAA
LOC_Os07g43330
Target Sequence 
GATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATACAGATGAAGACGNCANCATAAATTTCCTAAAGTAACTAC
GCAAATNTTTCTTTCACAAATTCCATCCACCTCTCCCAGCNTATACTAGAAGGTTTCGCCAAAGTTCCATTTAGTGAATA
TATATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCAGAATTCTCCCATGGAGCA
GAAAGATGTGGCCAACGGCGAAATCCATNTGGGCCAACTGCTGCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTAT
GCAGATCCTCTATTCATTGTTTCCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACAT
GCGAAATNGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAANGTGCATTCTCTGTGTGGTG
CCTCTAGCTCTGACACTTTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21364.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis