Browse Element(s) Details


OsAffx.16693.1.S1_x_at

Description tigr:9635.m04343
TID=OsAffx.16693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SAP domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4332211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43260Os.45955.1.S1_at11/117+25913067..25913789Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein
LOC_Os07g43290Os.9342.1.S1_at11/117+25918985..25921176Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g43300OsAffx.28886.1.S1_at10/117+25925395..25927053hypothetical protein
LOC_Os07g43310Os.37786.1.S1_at11/117+25928589..25929668Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os07g43316Os.36427.2.S1_x_at11/117+25931353..25934831expressed protein
LOC_Os07g43316Os.36427.2.S1_at11/117+25931353..25934831expressed protein
LOC_Os07g43322Os.32430.1.S1_at11/117+25935223..25938682expressed protein
LOC_Os07g43322OsAffx.16693.1.S1_x_at11/117+25935223..25938682expressed protein
LOC_Os07g43330Os.21364.2.S1_x_at11/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43330Os.21364.1.S1_at8/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43340OsAffx.5622.1.S1_at11/117+25942601..25942986hypothetical protein
LOC_Os07g43350Os.32679.1.S1_at11/117+25944257..25948867Leucine Rich Repeat family protein, expressed
LOC_Os07g43360Os.9844.1.A1_at11/117+25957146..25961948histone acetyltransferase MYST1, putative, expressed
LOC_Os07g43364Os.52361.1.S1_at10/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.2.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.1.S1_x_at1/117+25962965..25964253expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16693.1.S1_x_at--1140--3251Chr07:25937646..25937670 (25 bp)
CAACAAATCGGTTCTTGACTCCAAG
LOC_Os07g43322
OsAffx.16693.1.S1_x_at--462--4891Chr07:25937681..25937705 (25 bp)
GCTTTAACTTCTCTATTGCATCTTC
LOC_Os07g43322
OsAffx.16693.1.S1_x_at--147--10731Chr07:25937696..25937720 (25 bp)
TTGCATCTTCTCACTCCATGGAGAG
LOC_Os07g43322
OsAffx.16693.1.S1_x_at--345--8791Chr07:25937763..25937787 (25 bp)
TGTTACTGCCATTACTACCTATTAC
LOC_Os07g43322
OsAffx.16693.1.S1_x_at--913--771Chr07:25937807..25937831 (25 bp)
ATGTGCCATCCAATCTTTCTACTTT
LOC_Os07g43322
OsAffx.16693.1.S1_x_at--594--2331Chr07:25937844..25937868 (25 bp)
AAAGTTGCTCCATATGCTATCATCA
LOC_Os07g43322
OsAffx.16693.1.S1_x_at--969--131Chr07:25937868..25937892 (25 bp)
ATTAAAGGTCCTTCGCACAACTCTT
LOC_Os07g43322
OsAffx.16693.1.S1_x_at--21--3051Chr07:25937894..25937914 (21 bp)
AATCGAACGTTGCTTCAAGGTCAGA
LOC_Os07g43322
OsAffx.16693.1.S1_x_at--601--3691Chr07:25938072..25938096 (25 bp)
CTATCTCATCTAACAGCAGCCTGAT
LOC_Os07g43322
OsAffx.16693.1.S1_x_at--516--9631Chr07:25938216..25938236 (21 bp)
TAATGCCTAGTTCTCTGGACAACCT
LOC_Os07g43322
OsAffx.16693.1.S1_x_at--529--2471Chr07:25938250..25938274 (25 bp)
AACACGAGCTTCCTGTATAGCGGTA
LOC_Os07g43322
Target Sequence 
CAACAAATCGGTTCTTGACTCCAAGAGAAGCAATAGCTTTAACTTCTCTATTGCATCTTCTCACTCCATGGAGAGGCACC
AAGATTTGCAAAGAGGAATATCATTACTAAAGACAAGTGTTACTGCCATTACTACCTATTACTATAACTCATTGGGTATG
GATGTGCCATCCAATCTTTCTACTTTTGAAGCATTTGCAAAGTTGCTCCATATGCTATCATCATTAAAGGTCCTTCGCAC
AACTCTTCAATCGAACGTTGCTTCAAGGTCAGAGAAGCAAGGACAGCAACTAAATAGATCTATATGGAAAGCGAGCTCCG
CTATCTCATCTAACAGCAGCCTGATGGACAGTGTGAACACAGCTATAATGCCTAGTTCTCTGGACAACCTCCTGCTGAAC
TCCAACACGAGCTTCCTGTATAGCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16693.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis