Browse Element(s) Details


Os.37786.1.S1_at

Description gb:AK062899.1
DB_XREF= gi:32972917
TID=Os.37786.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU058363(E50673)~ribosomal-like protein (OJ1339_F05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F02, full insert sequence.
FL= gb:AK062899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4331011/11Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43240Os.9982.1.S1_at9/117+25902941..25903886Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43250Os.9531.1.S1_at11/117+25905959..25906801Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43260Os.45955.1.S1_at11/117+25913067..25913789Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein
LOC_Os07g43290Os.9342.1.S1_at11/117+25918985..25921176Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g43300OsAffx.28886.1.S1_at10/117+25925395..25927053hypothetical protein
LOC_Os07g43310Os.37786.1.S1_at11/117+25928589..25929668Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os07g43316Os.36427.2.S1_x_at11/117+25931353..25934831expressed protein
LOC_Os07g43316Os.36427.2.S1_at11/117+25931353..25934831expressed protein
LOC_Os07g43322Os.32430.1.S1_at11/117+25935223..25938682expressed protein
LOC_Os07g43322OsAffx.16693.1.S1_x_at11/117+25935223..25938682expressed protein
LOC_Os07g43330Os.21364.2.S1_x_at11/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43330Os.21364.1.S1_at8/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43340OsAffx.5622.1.S1_at11/117+25942601..25942986hypothetical protein
LOC_Os07g43350Os.32679.1.S1_at11/117+25944257..25948867Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37786.1.S1_at--132--4671Chr07:25929317..25929341 (25 bp)
GCGGTGAAGACGTCGTTCGATGTCA
LOC_Os07g43310
Os.37786.1.S1_at--88--4711Chr07:25929275..25929299 (25 bp)
GCGGCGGCGAAGATAAAGATCATCA
LOC_Os07g43310
Os.37786.1.S1_at--59--9131Chr07:25929178..25929202 (25 bp)
TGCGATCCGGGCTTCCCAAGGAGGA
LOC_Os07g43310
Os.37786.1.S1_at--154--9371Chr07:25929103..25929127 (25 bp)
TCGAGTGATCCCGAGCGGAAGAACG
LOC_Os07g43310
Os.37786.1.S1_at--348--7911Chr07:25929058..25929082 (25 bp)
GGTTCCTACTGTTATCCTTAGATCG
LOC_Os07g43310
Os.37786.1.S1_at--946--3711Chr07:25929027..25929051 (25 bp)
CTACGCTTGTGGGTGCCTTGGTTTG
LOC_Os07g43310
Os.37786.1.S1_at--112--6671Chr07:25928900..25928924 (25 bp)
GTTGAATCACGCAATAATGTCTATT
LOC_Os07g43310
Os.37786.1.S1_at--899--6551Chr07:25928843..25928867 (25 bp)
GATTAGCTGAATTGACTTGTCTGGG
LOC_Os07g43310
Os.37786.1.S1_at--709--6471Chr07:25928806..25928830 (25 bp)
GATACAATTGTAGTTGGCTCTACTG
LOC_Os07g43310
Os.37786.1.S1_at--1027--8311Chr07:25928791..25928815 (25 bp)
GGCTCTACTGTATCGAGTGATTCGC
LOC_Os07g43310
Os.37786.1.S1_at--1097--6571Chr07:25928773..25928797 (25 bp)
GATTCGCATATGGTTAGCTTCAGTT
LOC_Os07g43310
Target Sequence 
GCGGTGAAGACGTCGTTCGATGTCAAGATCGAGAAGTACGAGGCGGCGGCGAAGATAAAGATCATCAAGGAGGTGCGCGC
GGTGACGGACCTGGGGCTGAAGGAGGCGAAGGAGCTCGTGGAGAAGGCGCCGGTCGTGGTGCGATCCGGGCTTCCCAAGG
AGGAGGCCGAGGCGCTCGCCGCCAAGCTCAAGGCCGCCGGCGCCGCCGTCGCGCTCGAGTGATCCCGAGCGGAAGAACGG
GTTCGCCCTTTTTATTTTTGGTTCCTACTGTTATCCTTAGATCGAAGNATNCTACGCTTGTGGGTGCCTTGGTTTGTTTG
GATTGANATTCGATGCAATTGGGGCAATTGATCAGGTGTNTAAGAAGATGCAGGTCTTGATTNCATTGTTGTAGCTTGCC
TANTTACTGATTTATCTTGTTGAATCACGCAATAATGTCTATTTTAGTGGTCTGGGNTCNCTGGNTGGTATATCTGATTA
GCTGAATTGACTTGTCTGGGGGGGCTTACAGAGATACAATTGTAGTTGGCTCTACTGTATCGAGTGATTCGCATATGGTT
AGCTTCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis