Browse Element(s) Details


Os.36427.2.S1_x_at

Description gb:AU062819
DB_XREF= gi:11863251
DB_XREF=AU062819
CLONE=C50596
TID=Os.36427.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU062819(C50596)~similar to Arabidopsis thaliana chromosome4, At4g39680~unknown protein (OJ1339_F05.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4331611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43250Os.9531.1.S1_at11/117+25905959..25906801Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43260Os.45955.1.S1_at11/117+25913067..25913789Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein
LOC_Os07g43290Os.9342.1.S1_at11/117+25918985..25921176Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g43300OsAffx.28886.1.S1_at10/117+25925395..25927053hypothetical protein
LOC_Os07g43310Os.37786.1.S1_at11/117+25928589..25929668Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os07g43316Os.36427.2.S1_x_at11/117+25931353..25934831expressed protein
LOC_Os07g43316Os.36427.2.S1_at11/117+25931353..25934831expressed protein
LOC_Os07g43322Os.32430.1.S1_at11/117+25935223..25938682expressed protein
LOC_Os07g43322OsAffx.16693.1.S1_x_at11/117+25935223..25938682expressed protein
LOC_Os07g43330Os.21364.2.S1_x_at11/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43330Os.21364.1.S1_at8/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43340OsAffx.5622.1.S1_at11/117+25942601..25942986hypothetical protein
LOC_Os07g43350Os.32679.1.S1_at11/117+25944257..25948867Leucine Rich Repeat family protein, expressed
LOC_Os07g43360Os.9844.1.A1_at11/117+25957146..25961948histone acetyltransferase MYST1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36427.2.S1_x_at--512--51Chr07:25933993..25934017 (25 bp)
ATTGTATTGATTTGTCTTCTTGTCC
LOC_Os07g43316
Os.36427.2.S1_x_at--42--9571Chr07:25934007..25934031 (25 bp)
TCTTCTTGTCCACACTGATTTTCAG
LOC_Os07g43316
Os.36427.2.S1_x_at--1078--3851Chr07:25934021..25934045 (25 bp)
CTGATTTTCAGTTCTCTTCGGTGGA
LOC_Os07g43316
Os.36427.2.S1_x_at--928--9411Chr07:25934038..25934062 (25 bp)
TCGGTGGAGGAAGCTCTGGCTACCA
LOC_Os07g43316
Os.36427.2.S1_x_at--337--9011Chr07:25934067..25934091 (25 bp)
TGCTGTTTACAATCTCCAATGGCCT
LOC_Os07g43316
Os.36427.2.S1_x_at--1026--3191Chr07:25934097..25934121 (25 bp)
CAATGGCAGTTCCTTAGTTGCTGAA
LOC_Os07g43316
Os.36427.2.S1_x_at--741--6671Chr07:25934113..25934137 (25 bp)
GTTGCTGAATTCGTTGATCCACATG
LOC_Os07g43316
Os.36427.2.S1_x_at--514--3811Chr07:25934240..25934264 (25 bp)
CTCCTCATGCTGCTGATACATCAAG
LOC_Os07g43316
Os.36427.2.S1_x_at--361--10731Chr07:25934291..25934315 (25 bp)
TTGCTAGGCTTCCAACCTTCAACAA
LOC_Os07g43316
Os.36427.2.S1_x_at--553--2331Chr07:25934349..25934373 (25 bp)
AAAGAACCCAGAACCACCTGTGGTG
LOC_Os07g43316
Os.36427.2.S1_x_at--876--10431Chr07:25934393..25934417 (25 bp)
TTAGGAAGACACAGGCCTCTCCGAG
LOC_Os07g43316
Target Sequence 
ATTGTATTGATTTGTCTTCTTGTCCACACTGATTTTCAGTTCTCTTCGGTGGAGGAAGCTCTGGCTACCAGGAATGCTGT
TTACAATCTCCAATGGCCTCCAAACAATGGCAGTTCCTTAGTTGCTGAATTCGTTGATCCACATGAGGTGAAGGCCAAAC
TTGAACCCCCTCCCCCACCTCCAGCACCTATCAACCCCACAGCAGCTACAGCACCTTCCCACCAATCCAAGGCCAACCAA
ATNATGCCTCCTCATGCTGCTGATACATCAAGGGGGCTATTACCCACACCACCAGCACTTGCTAGGCTTCCAACCTTCAA
CAACGCACCAGCGAGGGAGATGCTTCCGCCCGCTCCAAAGAACCCAGAACCACCTGTGGTGNTGANCTCTTGATGATCTC
TTTAGGAAGACACAGGCCTCTCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36427.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis