Browse Element(s) Details


Os.9531.1.S1_at

Description gb:AK064628.1
DB_XREF= gi:32974646
TID=Os.9531.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Skp1(S-phase kinase-associated protein 1) (OJ1339_F05.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F08, full insert sequence.
FL= gb:AK064628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4325011/11Skp1 family, dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43180OsAffx.21309.1.S1_x_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43180OsAffx.21309.1.S1_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43190NANA7+25885163..25885573hypothetical protein
LOC_Os07g43200OsAffx.21308.1.S1_at4/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200OsAffx.21308.2.S1_x_at2/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200Os.41653.1.S1_x_at1/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43210OsAffx.28883.1.S1_at10/117+25893217..25893711hypothetical protein
LOC_Os07g43220OsAffx.9082.1.S1_at11/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43220OsAffx.21309.1.S1_x_at1/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43230OsAffx.16692.1.S1_at11/117+25900257..25901042Skp1 family, tetramerisation domain containing protein
LOC_Os07g43240Os.9982.1.S1_at9/117+25902941..25903886Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43250Os.9531.1.S1_at11/117+25905959..25906801Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43260Os.45955.1.S1_at11/117+25913067..25913789Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein
LOC_Os07g43290Os.9342.1.S1_at11/117+25918985..25921176Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g43300OsAffx.28886.1.S1_at10/117+25925395..25927053hypothetical protein
LOC_Os07g43310Os.37786.1.S1_at11/117+25928589..25929668Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os07g43316Os.36427.2.S1_x_at11/117+25931353..25934831expressed protein
LOC_Os07g43316Os.36427.2.S1_at11/117+25931353..25934831expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9531.1.S1_at--1069--4671Chr07:25906219..25906243 (25 bp)
GCGGCTGCGTCGACAAGGGCTTCCC
LOC_Os07g43250
Os.9531.1.S1_at--539--1231Chr07:25906348..25906372 (25 bp)
AGTTCGACAGGGACTTCATCGCCGA
LOC_Os07g43250
Os.9531.1.S1_at--276--1951Chr07:25906506..25906530 (25 bp)
ACGGCCTTCGGCATCGAGTACGACC
LOC_Os07g43250
Os.9531.1.S1_at--127--991Chr07:25906561..25906585 (25 bp)
AGGAGGATACTCACGCATGACGCAC
LOC_Os07g43250
Os.9531.1.S1_at--289--9691Chr07:25906571..25906595 (25 bp)
TCACGCATGACGCACCAGCTAGCTG
LOC_Os07g43250
Os.9531.1.S1_at--1156--7031Chr07:25906601..25906625 (25 bp)
GTAAGCCGTAGTGTCCTCGTCGTAA
LOC_Os07g43250
Os.9531.1.S1_at--504--1111Chr07:25906610..25906634 (25 bp)
AGTGTCCTCGTCGTAACGATTGTTC
LOC_Os07g43250
Os.9531.1.S1_at--1087--2571Chr07:25906624..25906648 (25 bp)
AACGATTGTTCTCTCGTAGTTGCGC
LOC_Os07g43250
Os.9531.1.S1_at--680--9511Chr07:25906633..25906657 (25 bp)
TCTCTCGTAGTTGCGCGTTGTGTCT
LOC_Os07g43250
Os.9531.1.S1_at--642--7931Chr07:25906663..25906687 (25 bp)
GGATTCAGATCCAATCAAGCTTACT
LOC_Os07g43250
Os.9531.1.S1_at--1019--9411Chr07:25906698..25906722 (25 bp)
TCGTGCATCCTGTGTCCAAGTAGAA
LOC_Os07g43250
Target Sequence 
GCGGCTGCGTCGACAAGGGCTTCCCGCTCCCCAACGTCGACTCCAAGACCCTCGCGAGGGTGATCCAGTACTGCGACGAG
CACGGCAACAAGGAGCCCCACACCGTCGACGAGAGAGCGGCGCTCGCCAAGTTCGACAGGGACTTCATCGCCGAGCTGGA
CGCCGACAAGGCCTTCCTCTACGACGTCACCATGGCCGCCAACTACCTCCACATCCAAGGGCTCCTCGCCCTCACCACCC
AGTGCGTCGCCGACACCATCAAGGGCAAGACCCCCGAGGAGATCCGCACGGCCTTCGGCATCGAGTACGACCTCACCGCG
CAGGACGAGAAGGAGATCAAGGAGGAGGATACTCACGCATGACGCACCAGCTAGCTGCCCCCGTAAGCCGTAGTGTCCTC
GTCGTAACGATTGTTCTCTCGTAGTTGCGCGTTGTGTCTCTGGTGGATTCAGATCCAATCAAGCTTACTGCCTTTGAGTT
CGTGCATCCTGTGTCCAAGTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis