Browse Element(s) Details


OsAffx.21309.1.S1_x_at

Description tigr:9635.m04329
TID=OsAffx.21309.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Skp1 family, dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4318011/11Skp1 family, dimerisation domain containing protein
LOC_Os07g432201/11Skp1 family, tetramerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43160Os.56349.1.S1_at11/117+25865517..25869537trehalose-phosphatase family protein, expressed
LOC_Os07g43170Os.10034.1.S1_at10/117+25876719..25880707UMP-CMP kinase family protein, expressed
LOC_Os07g43180OsAffx.21309.1.S1_x_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43180OsAffx.21309.1.S1_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43190NANA7+25885163..25885573hypothetical protein
LOC_Os07g43200OsAffx.21308.1.S1_at4/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200OsAffx.21308.2.S1_x_at2/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200Os.41653.1.S1_x_at1/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43210OsAffx.28883.1.S1_at10/117+25893217..25893711hypothetical protein
LOC_Os07g43220OsAffx.9082.1.S1_at11/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43220OsAffx.21309.1.S1_x_at1/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43230OsAffx.16692.1.S1_at11/117+25900257..25901042Skp1 family, tetramerisation domain containing protein
LOC_Os07g43240Os.9982.1.S1_at9/117+25902941..25903886Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43250Os.9531.1.S1_at11/117+25905959..25906801Skp1 family, dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21309.1.S1_x_at--250--4691Chr07:25882859..25882883 (25 bp)
GCGGCAGGAGGACGATCCACCTCAA
LOC_Os07g43180
OsAffx.21309.1.S1_x_at--583--851Chr07:25882892..25882916 (25 bp)
ATGGCAAGCAGCATGATGTGACGGA
LOC_Os07g43180
OsAffx.21309.1.S1_x_at--311--911Chr07:25882927..25882951 (25 bp)
AGGCTGTCCAAGACCATCGCCGGGA
LOC_Os07g43180
OsAffx.21309.1.S1_x_at--676--1731Chr07:25882939..25882963 (25 bp)
ACCATCGCCGGGATGATTCTCGCCG
LOC_Os07g43180
OsAffx.21309.1.S1_x_at--930--311Chr07:25883018..25883042 (25 bp)
ATACCCTCCGCGTGGTGATGCAGTA
LOC_Os07g43180
OsAffx.21309.1.S1_x_at--557--652Chr07:25883035..25883059 (25 bp)
ATGCAGTACTGCGACAAGCACGCCG
LOC_Os07g43180
OsAffx.21309.1.S1_x_at--120--8111Chr07:25883124..25883148 (25 bp)
GGACGCCCTCTTCGATGTCATCGCG
LOC_Os07g43180
OsAffx.21309.1.S1_x_at--64--1771Chr07:25883188..25883212 (25 bp)
ACCTGCAAGAGGGTCGCCGACACGA
LOC_Os07g43180
OsAffx.21309.1.S1_x_at--250--1051Chr07:25883197..25883221 (25 bp)
AGGGTCGCCGACACGATCAAGGGCA
LOC_Os07g43180
OsAffx.21309.1.S1_x_at--823--6371Chr07:25883235..25883259 (25 bp)
GATCCGCAAGGAGTTCAACATCGTC
LOC_Os07g43180
OsAffx.21309.1.S1_x_at--315--2091Chr07:25883252..25883276 (25 bp)
ACATCGTCAACGACCTCAGTAAGGA
LOC_Os07g43180
Target Sequence 
GCGGCAGGAGGACGATCCACCTCAAGAGCAAGGATGGCAAGCAGCATGATGTGACGGAGGCGTCGGCGAGGCTGTCCAAG
ACCATCGCCGGGATGATTCTCGCCGGCGGCGGCGGCGGCGGCGCCGACCAGTGCATCCCGACCCCCGACATCGACCACGA
TACCCTCCGCGTGGTGATGCAGTACTGCGACAAGCACGCCGCCGACGACGCCGACGAGGAGGATCTCAAGGAGTGGGACG
AAGACTTCGTCGACGAGCTGGACCAGGACGCCCTCTTCGATGTCATCGCGGCCGCCAACTACCTCGACATCGATGGCCTC
CTCGACCTCACCTGCAAGAGGGTCGCCGACACGATCAAGGGCAAGACCCCCGAGGAGATCCGCAAGGAGTTCAACATCGT
CAACGACCTCAGTAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21309.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis