Browse Element(s) Details


Os.56349.1.S1_at

Description gb:AK109902.1
DB_XREF= gi:32995111
TID=Os.56349.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-F10, full insert sequence.
FL= gb:AK109902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4316011/11trehalose-phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43120Os.14508.1.S1_at7/117+25839110..25841493hAT family dimerisation domain containing protein
LOC_Os07g43120Os.14508.2.S1_x_at5/117+25839110..25841493hAT family dimerisation domain containing protein
LOC_Os07g43130NANA7+25843284..25843985hypothetical protein
LOC_Os07g43140OsAffx.5618.1.S1_at11/117+25846031..25846789VQ motif family protein
LOC_Os07g43140OsAffx.5618.1.S1_x_at11/117+25846031..25846789VQ motif family protein
LOC_Os07g43150OsAffx.5619.1.S1_at11/117+25849165..25850019hypothetical protein
LOC_Os07g43160Os.56349.1.S1_at11/117+25865517..25869537trehalose-phosphatase family protein, expressed
LOC_Os07g43170Os.10034.1.S1_at10/117+25876719..25880707UMP-CMP kinase family protein, expressed
LOC_Os07g43180OsAffx.21309.1.S1_x_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43180OsAffx.21309.1.S1_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43190NANA7+25885163..25885573hypothetical protein
LOC_Os07g43200OsAffx.21308.1.S1_at4/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200OsAffx.21308.2.S1_x_at2/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200Os.41653.1.S1_x_at1/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43210OsAffx.28883.1.S1_at10/117+25893217..25893711hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56349.1.S1_at--354--531Chr07:25868019..25868043 (25 bp)
ATCGACTGGGACAAAGGCTCCGCAC
LOC_Os07g43160
Os.56349.1.S1_at--647--9271Chr07:25868050..25868468 (25 bp)
TCCTGCTCAAATCTCTCGGTTATGA
LOC_Os07g43160
Os.56349.1.S1_at--1028--7551Chr07:25868470..25868494 (25 bp)
GGGCGCAACAATGTTTTCCCGATAT
LOC_Os07g43160
Os.56349.1.S1_at--687--2311Chr07:25868699..25868723 (25 bp)
AAAGGAGACAGCTGCATCCTACACT
LOC_Os07g43160
Os.56349.1.S1_at--1004--8211Chr07:25869251..25869275 (25 bp)
GGCAAGTAGCTGATCCAAGGCATAT
LOC_Os07g43160
Os.56349.1.S1_at--592--4851Chr07:25869285..25869309 (25 bp)
GCTAGCTTTTTGTTCCTTAATTTGT
LOC_Os07g43160
Os.56349.1.S1_at--17--7171Chr07:25869308..25869332 (25 bp)
GTCTCTTTCCTTTTGGTCCATTAGA
LOC_Os07g43160
Os.56349.1.S1_at--123--1051Chr07:25869432..25869456 (25 bp)
AGGTGTCTATTACCGTATCCTTCTG
LOC_Os07g43160
Os.56349.1.S1_at--681--571Chr07:25869448..25869472 (25 bp)
ATCCTTCTGGCCAAGGTCCTGTAAT
LOC_Os07g43160
Os.56349.1.S1_at--1123--131Chr07:25869471..25869495 (25 bp)
ATTAAATTTTGCTGCCGTGACAACA
LOC_Os07g43160
Os.56349.1.S1_at--693--6131Chr07:25869509..25869533 (25 bp)
GAGGGACACAAGTGTGGCCCCTTTT
LOC_Os07g43160
Target Sequence 
ATCGACTGGGACAAAGGCTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCCGAT
ATACATTNGGAGANGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGGACAGGGCATAGGAATCCTTGTG
ACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGT
GAAGATTAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGCTAGCTAGCTTTTTG
TTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAANAACAACAACAAGAGTTATATGCATGGATGGTAA
CTGATCATGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTG
GCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCCCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis