Browse Element(s) Details


OsAffx.5618.1.S1_at

Description tigr:9635.m04325
TID=OsAffx.5618.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=VQ motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4314011/11VQ motif family protein
LOC_Os03g514791/11Maf-like protein, expressed
LOC_Os09g120501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g394601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43090OsAffx.20387.1.S1_x_at2/117+25819289..25824215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43100NANA7+25828014..25828508retrotransposon protein, putative, unclassified
LOC_Os07g43110Os.25754.2.S1_x_at3/117+25832180..25835168retrotransposon protein, putative, unclassified
LOC_Os07g43110Os.53479.1.S1_x_at1/117+25832180..25835168retrotransposon protein, putative, unclassified
LOC_Os07g43120Os.14508.1.S1_at7/117+25839110..25841493hAT family dimerisation domain containing protein
LOC_Os07g43120Os.14508.2.S1_x_at5/117+25839110..25841493hAT family dimerisation domain containing protein
LOC_Os07g43130NANA7+25843284..25843985hypothetical protein
LOC_Os07g43140OsAffx.5618.1.S1_at11/117+25846031..25846789VQ motif family protein
LOC_Os07g43140OsAffx.5618.1.S1_x_at11/117+25846031..25846789VQ motif family protein
LOC_Os07g43150OsAffx.5619.1.S1_at11/117+25849165..25850019hypothetical protein
LOC_Os07g43160Os.56349.1.S1_at11/117+25865517..25869537trehalose-phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5618.1.S1_at--1026--8391Chr07:25846591..25846615 (25 bp)
GGCGCGCAAGAACAGTACCACCTGG
LOC_Os07g43140
OsAffx.5618.1.S1_at--529--4591Chr07:25846588..25846612 (25 bp)
GCGCAAGAACAGTACCACCTGGCGC
LOC_Os07g43140
OsAffx.5618.1.S1_at--480--891Chr07:25846545..25846569 (25 bp)
AGGCCGCCGATCAGCGCAAGCCAAC
LOC_Os07g43140
OsAffx.5618.1.S1_at--108--8571Chr07:25846163..25846187 (25 bp)
TGGTTCCGATCTGTACGGTGGCTAT
LOC_Os07g43140
OsAffx.5618.1.S1_at--490--4036Chr09:6802618..6802638 (21 bp)
CGATCTGTACGGTGGCTATGGAAAC
LOC_Os09g12050
OsAffx.5618.1.S1_at--514--3691Chr07:25846142..25846166 (25 bp)
CTATGGAAACATGCTCGCCGGAGCT
LOC_Os07g43140
OsAffx.5618.1.S1_at--1136--831Chr07:25846140..25846164 (25 bp)
ATGGAAACATGCTCGCCGGAGCTGT
LOC_Os07g43140
OsAffx.5618.1.S1_at--792--5892Chr03:29409686..29409709 (23 bp)
GAGCTGTCCCGTTCGACGACGACTT
LOC_Os03g51479
OsAffx.5618.1.S1_at--669--6711Chr07:25846112..25846136 (25 bp)
GTTCGACGACGACTTTGACGCAGCA
LOC_Os07g43140
OsAffx.5618.1.S1_at--179--5791Chr07:25846108..25846132 (25 bp)
GACGACGACTTTGACGCAGCAGACG
LOC_Os07g43140
OsAffx.5618.1.S1_at--638--4091Chr07:25846106..25846130 (25 bp)
CGACGACTTTGACGCAGCAGACGGC
LOC_Os07g43140
Target Sequence 
GGCGCGCAAGAACAGTACCACCTGGCGCCGGCCGTAGCGCTGCACCAGGCCGCCGATCAGCGCAAGCCAACGCGGAAGCG
GCCGAGGGCGGCGTCGCGGCGGCCGCCGACCACGGTGCTCACCACCGACGCCTCCAACTTCCGCGCCATGGTGCAGGAGT
TCACCGGCTTCCCCGCCACGCCGCCCTTACCGTGCGGCGGCGCCATGCCGCCGTCGTCCCATCTCCTCTCCGGCGAGGGC
GTGCTCTTCCCCTCCGGCTCCGGCTCCGGCTCCGCCGCCGCGCCGGCGTTCCAGGCGATGATGCGCGCGTCGTCGTCCCC
GGCCACCAACACCACCACCTCCCTTGTGCTCGACGCGCTCGCCATGCTCGCCAAGTCCAGAGCCATCGCCACCGCCGCCG
CCGCCGCCGCCGCTGCACCGCCAAGCTCTGGTTCCGATCTGTACGGTGGCTATGGAAACATGCTCGCCGGAGCTGTCCCG
TTCGACGACGACTTTGACGCAGCAGACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis