Browse Element(s) Details


OsAffx.5619.1.S1_at

Description tigr:9635.m04326
TID=OsAffx.5619.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4315011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43090OsAffx.20387.1.S1_x_at2/117+25819289..25824215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43100NANA7+25828014..25828508retrotransposon protein, putative, unclassified
LOC_Os07g43110Os.25754.2.S1_x_at3/117+25832180..25835168retrotransposon protein, putative, unclassified
LOC_Os07g43110Os.53479.1.S1_x_at1/117+25832180..25835168retrotransposon protein, putative, unclassified
LOC_Os07g43120Os.14508.1.S1_at7/117+25839110..25841493hAT family dimerisation domain containing protein
LOC_Os07g43120Os.14508.2.S1_x_at5/117+25839110..25841493hAT family dimerisation domain containing protein
LOC_Os07g43130NANA7+25843284..25843985hypothetical protein
LOC_Os07g43140OsAffx.5618.1.S1_at11/117+25846031..25846789VQ motif family protein
LOC_Os07g43140OsAffx.5618.1.S1_x_at11/117+25846031..25846789VQ motif family protein
LOC_Os07g43150OsAffx.5619.1.S1_at11/117+25849165..25850019hypothetical protein
LOC_Os07g43160Os.56349.1.S1_at11/117+25865517..25869537trehalose-phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5619.1.S1_at--737--5531Chr07:25849450..25849474 (25 bp)
GAAAAATCACAAATCCTCCATGGAG
LOC_Os07g43150
OsAffx.5619.1.S1_at--179--2271Chr07:25849447..25849471 (25 bp)
AAATCACAAATCCTCCATGGAGACG
LOC_Os07g43150
OsAffx.5619.1.S1_at--1026--831Chr07:25849334..25849455 (25 bp)
ATGGAGACGCCGCTGTCTCTGCATT
LOC_Os07g43150
OsAffx.5619.1.S1_at--5--4231Chr07:25849325..25849347 (23 bp)
CCGCTGTCTCTGCATTTTACTGGTA
LOC_Os07g43150
OsAffx.5619.1.S1_at--737--4731Chr07:25849323..25849347 (25 bp)
GCTGTCTCTGCATTTTACTGGTACA
LOC_Os07g43150
OsAffx.5619.1.S1_at--694--7151Chr07:25849320..25849344 (25 bp)
GTCTCTGCATTTTACTGGTACAACA
LOC_Os07g43150
OsAffx.5619.1.S1_at--284--4951Chr07:25849314..25849338 (25 bp)
GCATTTTACTGGTACAACAAACGGG
LOC_Os07g43150
OsAffx.5619.1.S1_at--756--3271Chr07:25849300..25849324 (25 bp)
CAACAAACGGGTGGATGGTTCAACA
LOC_Os07g43150
OsAffx.5619.1.S1_at--667--3271Chr07:25849297..25849321 (25 bp)
CAAACGGGTGGATGGTTCAACAAGT
LOC_Os07g43150
OsAffx.5619.1.S1_at--833--7871Chr07:25849284..25849308 (25 bp)
GGTTCAACAAGTTTCAAGGCATTGC
LOC_Os07g43150
OsAffx.5619.1.S1_at--939--10491Chr07:25849282..25849306 (25 bp)
TTCAACAAGTTTCAAGGCATTGCAG
LOC_Os07g43150
Target Sequence 
GAAAAATCACAAATCCTCCATGGAGACGCCGCTGTCTCTGCATTTTACTGGTACAACAAACGGGTGGATGGTTCAACAAG
TTTCAAGGCATTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis