Browse Element(s) Details


Os.14508.2.S1_x_at

Description gb:NM_185167.1
DB_XREF= gi:34897419
TID=Os.14508.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0081B07.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0081B07.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6073011/11BED zinc finger family protein, expressed
LOC_Os07g431205/11hAT family dimerisation domain containing protein
LOC_Os12g255203/11hypothetical protein
LOC_Os02g261201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60740Os.17911.1.S1_at11/113+34465420..34468030expressed protein
LOC_Os03g60750Os.37217.2.S1_at11/113+34468139..34470365FtsJ-like methyltransferase family protein, putative, expressed
LOC_Os03g60760Os.37217.1.S1_at11/113+34472116..34472762expressed protein
LOC_Os03g60780Os.6349.1.S1_a_at11/113+34475214..34478234Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g60790Os.33670.3.S1_s_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.2.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.1.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.3.S1_x_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60800Os.26905.2.S1_x_at11/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60800Os.26905.1.A1_at9/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60810Os.44937.1.S1_at11/113+34484417..34486932Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14508.2.S1_x_at--969--6271Chr03:34462778..34462802 (25 bp)
GATGTATGTACTCGTTGGAACTCCA
LOC_Os03g60730
Os.14508.2.S1_x_at--1041--8291Chr03:34462840..34462864 (25 bp)
GGCTTATGCTTCATTGGCTGTTCAA
LOC_Os03g60730
Os.14508.2.S1_x_at--648--3131Chr03:34462871..34462895 (25 bp)
AATTACAAATATGCACCCTCTCCTG
LOC_Os03g60730
Os.14508.2.S1_x_at--388--1811Chr03:34462885..34462909 (25 bp)
ACCCTCTCCTGATCAGTGGGAAAGA
LOC_Os03g60730
Os.14508.2.S1_x_at--623--5152Chr03:34462949..34462973 (25 bp)
GCAACTATGGTGGTGTCTGGATCTT
LOC_Os03g60730
Os.14508.2.S1_x_at--1120--3272Chr03:34462986..34463010 (25 bp)
CAAACCTTTATTTCCATGAGATGTG
LOC_Os03g60730
Os.14508.2.S1_x_at--1054--7131Chr03:34463024..34463048 (25 bp)
GTCTTGGACAAGGAACACTCTAACA
LOC_Os03g60730
Os.14508.2.S1_x_at--26--492Chr03:34463124..34463148 (25 bp)
ATCTGTGCATTCCTGTCATTTTTGA
LOC_Os03g60730
Os.14508.2.S1_x_at--1034--10394Chr03:34463167..34463191 (25 bp)
TTTTGTGGAATTTCGGCTTGGGCAA
LOC_Os03g60730
Os.14508.2.S1_x_at--503--7952Chr03:34463278..34463302 (25 bp)
GGATAGCAATGCTAACCCACTGCGC
LOC_Os03g60730
Os.14508.2.S1_x_at--252--1993Chr03:34463296..34463320 (25 bp)
ACTGCGCCAAGCTGAACATGTGATG
LOC_Os03g60730
Target Sequence 
GATGTATGTACTCGTTGGAACTCCACATATCTAATGCTCAATGCAGCCTTCCCTTTCATGAGGGCTTATGCTTCATTGGC
TGTTCAAGACAAAAATTACAAATATGCACCCTCTCCTGATCAGTGGGAAAGATCAACCATAGTCTCTGGAATTTTGAAGG
TGCTTTATGATGCAACTATGGTGGTGTCTGGATCTTTATATCCAACATCAAACCTTTATTTCCATGAGATGTGGAAAATC
AAATTGGTCTTGGACAAGGAACACTCTAACAATGACACTGAAGTGGCAAGTATGGTTCAAAAGATGAAGGACAAATTTGA
CAAGTATTGGCTTAAGTCTTACAAATATCTGTGCATTCCTGTCATTTTTGACCCAAGATTCAAATTCAATTTTGTGGAAT
TTCGGCTTGGGCAAGCCTTTGGTGAAAATGCTAAAGAGAGGATTGACAAAGTTAAGAAGAGAATGAACATGTTGTTTAAG
GAGTACTCTGATAAACTCAAGGATAGCAATGCTAACCCACTGCGCCAAGCTGAACATGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14508.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis