Browse Element(s) Details


Os.33670.2.S1_at

Description gb:AK069263.1
DB_XREF= gi:32979287
TID=Os.33670.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DnaJ homolog subfamily protein (OSJNBb0081B07.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010B22, full insert sequence.
FL= gb:AK069263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6079011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60740Os.17911.1.S1_at11/113+34465420..34468030expressed protein
LOC_Os03g60750Os.37217.2.S1_at11/113+34468139..34470365FtsJ-like methyltransferase family protein, putative, expressed
LOC_Os03g60760Os.37217.1.S1_at11/113+34472116..34472762expressed protein
LOC_Os03g60780Os.6349.1.S1_a_at11/113+34475214..34478234Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g60790Os.33670.3.S1_s_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.2.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.1.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.3.S1_x_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60800Os.26905.2.S1_x_at11/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60800Os.26905.1.A1_at9/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60810Os.44937.1.S1_at11/113+34484417..34486932Protein kinase domain containing protein, expressed
LOC_Os03g60820Os.6533.1.S1_at11/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60820Os.5150.1.S1_at10/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60830Os.35344.3.S1_x_at6/113+34502382..34503607hypothetical protein
LOC_Os03g60830Os.35344.18.S1_x_at5/113+34502382..34503607hypothetical protein
LOC_Os03g60830OsAffx.22940.5.S1_x_at3/113+34502382..34503607hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33670.2.S1_at--603--711Chr03:34479922..34479946 (25 bp)
ATGATACCTATAGCCATCGCAACCT
LOC_Os03g60790
Os.33670.2.S1_at--542--2631Chr03:34479942..34479966 (25 bp)
AACCTGCTTGGTTGTCTGTGTGCAG
LOC_Os03g60790
Os.33670.2.S1_at--453--7331Chr03:34479961..34479985 (25 bp)
GTGCAGGTATTTGATGTACCCATTC
LOC_Os03g60790
Os.33670.2.S1_at--776--7131Chr03:34479988..34480012 (25 bp)
GTCTTCAGAAGGTGATGGTAGCTCA
LOC_Os03g60790
Os.33670.2.S1_at--265--9871Chr03:34480033..34480057 (25 bp)
TACAGCTCACAAGTTCAGGGCATCC
LOC_Os03g60790
Os.33670.2.S1_at--118--1091Chr03:34480049..34480073 (25 bp)
AGGGCATCCAGCCTCTTTATAAGAT
LOC_Os03g60790
Os.33670.2.S1_at--771--3611Chr03:34480085..34480109 (25 bp)
CTTGGGTGTGTTCTGCACTTGTGAA
LOC_Os03g60790
Os.33670.2.S1_at--509--6291Chr03:34480126..34480150 (25 bp)
GATGATATCCTGTTACACAGTGTAT
LOC_Os03g60790
Os.33670.2.S1_at--1150--10111Chr03:34480148..34480172 (25 bp)
TATGTTGTCATTTCGTGCGGCCAAA
LOC_Os03g60790
Os.33670.2.S1_at--54--10231Chr03:34480159..34480183 (25 bp)
TTCGTGCGGCCAAAATGGGTTTAAT
LOC_Os03g60790
Os.33670.2.S1_at--1105--7631Chr03:34480175..34480199 (25 bp)
GGGTTTAATTTTGACATTTCGATGA
LOC_Os03g60790
Target Sequence 
ATGATACCTATAGCCATCGCAACCTGCTTGGTTGTCTGTGTGCAGGTATTTGATGTACCCATTCTTGTCTTCAGAAGGTG
ATGGTAGCTCAGATATTGTTAGTTTAGGTGATACAGCTCACAAGTTCAGGGCATCCAGCCTCTTTATAAGATGTTTGTGG
TGTCTTGGGTGTGTTCTGCACTTGTGAAATTTTTGGGAGTAAAAGATGATATCCTGTTACACAGTGTATGTTGTCATTTC
GTGCGGCCAAAATGGGTTTAATTTTGACATTTCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33670.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis