Browse Element(s) Details


Os.6533.1.S1_at

Description gb:AK072964.1
DB_XREF= gi:32982987
TID=Os.6533.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150H09, full insert sequence.
FL= gb:AK072964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6082011/11sugar transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60750Os.37217.2.S1_at11/113+34468139..34470365FtsJ-like methyltransferase family protein, putative, expressed
LOC_Os03g60760Os.37217.1.S1_at11/113+34472116..34472762expressed protein
LOC_Os03g60780Os.6349.1.S1_a_at11/113+34475214..34478234Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g60790Os.33670.3.S1_s_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.2.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.1.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.3.S1_x_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60800Os.26905.2.S1_x_at11/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60800Os.26905.1.A1_at9/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60810Os.44937.1.S1_at11/113+34484417..34486932Protein kinase domain containing protein, expressed
LOC_Os03g60820Os.6533.1.S1_at11/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60820Os.5150.1.S1_at10/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60830Os.35344.3.S1_x_at6/113+34502382..34503607hypothetical protein
LOC_Os03g60830Os.35344.18.S1_x_at5/113+34502382..34503607hypothetical protein
LOC_Os03g60830OsAffx.22940.5.S1_x_at3/113+34502382..34503607hypothetical protein
LOC_Os03g60840Os.7612.1.S1_at10/113+34506004..34507021Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os03g60850Os.27063.1.S1_at11/113+34513269..34515907POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6533.1.S1_at--696--4231Chr03:34496478..34496502 (25 bp)
CCGAGCCGAGCAGAGATATATAGAG
LOC_Os03g60820
Os.6533.1.S1_at--509--10071Chr03:34496413..34496437 (25 bp)
TAGTGAACCTTTTGCATTATAATGT
LOC_Os03g60820
Os.6533.1.S1_at--1097--6871Chr03:34496276..34496300 (25 bp)
GTATATTTGTTTACTGCCAACTAAA
LOC_Os03g60820
Os.6533.1.S1_at--256--5131Chr03:34496244..34496268 (25 bp)
GCAAATATCTAAACTGCCGATGCTT
LOC_Os03g60820
Os.6533.1.S1_at--880--2371Chr03:34496234..34496258 (25 bp)
AAACTGCCGATGCTTTGTTAGAAAG
LOC_Os03g60820
Os.6533.1.S1_at--61--3611Chr03:34496131..34496155 (25 bp)
CATTGTTGTGTCCATGTATATTACA
LOC_Os03g60820
Os.6533.1.S1_at--603--2491Chr03:34496092..34496116 (25 bp)
AACATCACTGAATCACCATGCTTTG
LOC_Os03g60820
Os.6533.1.S1_at--697--1731Chr03:34496078..34496102 (25 bp)
ACCATGCTTTGTGCCAGGCGATGCA
LOC_Os03g60820
Os.6533.1.S1_at--202--9931Chr03:34495964..34495988 (25 bp)
TACTGGTATATCTCTCTTCCAACTG
LOC_Os03g60820
Os.6533.1.S1_at--761--9571Chr03:34495950..34495974 (25 bp)
TCTTCCAACTGCTACACACTTTTAA
LOC_Os03g60820
Os.6533.1.S1_at--320--10331Chr03:34495930..34495954 (25 bp)
TTTAAGTATACCCATCTATCCCCTG
LOC_Os03g60820
Target Sequence 
CCGAGCCGAGCAGAGATATATAGAGGCAGCAGACTGAGCTGGGGCTTATAAGGAAGGAATGATTTTAGTGAACCTTTTGC
ATTATAATGTATAGTGATTTCAATATTTTAATTTATTGTTCAACTTCTAATAGATGTTGTATAAAAAAACGCTTTTACCC
GTTGCAACGCACGGGCATTTTTTCTAGTTAATACTACAAACAGTATATTTGTTTACTGCCAACTAAAAAAATCCGCAAAT
ATCTAAACTGCCGATGCTTTGTTAGAAAGGTGTTAATAATAACTGAAGAGGAACATAAATGCAAATGAACATATTCATAT
CAAACTAAAGGTTTGGAGATAATGAATCATTGTTGTGTCCATGTATATTACATCATGGGGTTATGTAACATCACTGAATC
ACCATGCTTTGTGCCAGGCGATGCACGGTGCACCTCTTTATATTGCAGAGACTTCTCCTTCGCGAATACGTGGGACATTG
ATATCTTTAAAGGAGTTGTTTATTGTATTAGGAATACTGGTATATCTCTCTTCCAACTGCTACACACTTTTAAGTATACC
CATCTATCCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis