Browse Element(s) Details


Os.6349.1.S1_a_at

Description gb:AK101448.1
DB_XREF= gi:32986657
TID=Os.6349.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.6349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Hsp70 binding protein (OSJNBb0081B07.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039M12, full insert sequence.
FL= gb:AK101448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6078011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60740Os.17911.1.S1_at11/113+34465420..34468030expressed protein
LOC_Os03g60750Os.37217.2.S1_at11/113+34468139..34470365FtsJ-like methyltransferase family protein, putative, expressed
LOC_Os03g60760Os.37217.1.S1_at11/113+34472116..34472762expressed protein
LOC_Os03g60780Os.6349.1.S1_a_at11/113+34475214..34478234Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g60790Os.33670.3.S1_s_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.2.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.1.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.3.S1_x_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60800Os.26905.2.S1_x_at11/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60800Os.26905.1.A1_at9/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60810Os.44937.1.S1_at11/113+34484417..34486932Protein kinase domain containing protein, expressed
LOC_Os03g60820Os.6533.1.S1_at11/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60820Os.5150.1.S1_at10/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60830Os.35344.3.S1_x_at6/113+34502382..34503607hypothetical protein
LOC_Os03g60830Os.35344.18.S1_x_at5/113+34502382..34503607hypothetical protein
LOC_Os03g60830OsAffx.22940.5.S1_x_at3/113+34502382..34503607hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6349.1.S1_a_at--797--291Chr03:34477668..34477692 (25 bp)
ATACATCCGGTGCTGGAAACGTGCT
LOC_Os03g60780
Os.6349.1.S1_a_at--91--5551Chr03:34477683..34477707 (25 bp)
GAAACGTGCTACCTGACCAAGACAA
LOC_Os03g60780
Os.6349.1.S1_a_at--21--1491Chr03:34477745..34477769 (25 bp)
AGCACAATGGATGCCGACGATCTCT
LOC_Os03g60780
Os.6349.1.S1_a_at--404--1551Chr03:34477791..34477815 (25 bp)
AGCTTGTGGACTCCCTCTGGAAGGA
LOC_Os03g60780
Os.6349.1.S1_a_at--589--2591Chr03:34477823..34477847 (25 bp)
AACGAGCCGTCGTCTCTCAGGGAGA
LOC_Os03g60780
Os.6349.1.S1_a_at--955--1711Chr03:34477891..34477915 (25 bp)
ACCACCGGATGTCGTTGGCAGCATG
LOC_Os03g60780
Os.6349.1.S1_a_at--151--8451Chr03:34477950..34477974 (25 bp)
GGCCACCTCCCAAAGAAGATTCAGA
LOC_Os03g60780
Os.6349.1.S1_a_at--239--5831Chr03:34478019..34478043 (25 bp)
GACCGTCTTCCTAGACTTGTTGGGA
LOC_Os03g60780
Os.6349.1.S1_a_at--635--7671Chr03:34478040..34478064 (25 bp)
GGGATTGCTTAGTTTTTCGCTTATG
LOC_Os03g60780
Os.6349.1.S1_a_at--70--10651Chr03:34478055..34478079 (25 bp)
TTCGCTTATGCAATTCTCTAGACTT
LOC_Os03g60780
Os.6349.1.S1_a_at--883--9451Chr03:34478122..34478146 (25 bp)
TCTGCATTTTAATCCTGTCCTGAGC
LOC_Os03g60780
Target Sequence 
ATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGC
ACAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTGTTACAACGA
GCCGTCGTCTCTCAGGGAGAAGGGTCTTGTTGTGCTTCCTGGAGAGGATGCACCTCAACAGCCNACCACCGGATGTCGTT
GGCAGCATGTTTGAGCCGCCNCTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGC
CAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCA
ATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6349.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis